Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17080

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17070 and CSW01_17075 are separated by 584 nucleotidesCSW01_17075 and CSW01_17080 are separated by 7 nucleotidesCSW01_17080 and CSW01_17085 are separated by 171 nucleotides CSW01_17070: CSW01_17070 - YoaH family protein, at 505,720 to 505,881 _17070 CSW01_17075: CSW01_17075 - stress response translation initiation inhibitor YciH, at 506,466 to 506,777 _17075 CSW01_17080: CSW01_17080 - DUF3319 domain-containing protein, at 506,785 to 507,168 _17080 CSW01_17085: CSW01_17085 - D-alanine--D-alanine ligase, at 507,340 to 508,344 _17085 Position (kb) 506 507 508Strain fitness (log2 ratio) -2 -1 0 1at 505.805 kb on + strand, within CSW01_17070at 506.007 kb on + strandat 506.128 kb on - strandat 506.520 kb on - strand, within CSW01_17075at 506.638 kb on - strand, within CSW01_17075at 506.639 kb on - strand, within CSW01_17075at 506.737 kb on + strand, within CSW01_17075at 506.745 kb on - strand, within CSW01_17075at 507.029 kb on - strand, within CSW01_17080at 507.052 kb on + strand, within CSW01_17080at 507.319 kb on + strandat 507.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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505,805 + CSW01_17070 0.52 -1.0
506,007 + +0.8
506,128 - +0.4
506,520 - CSW01_17075 0.17 -0.7
506,638 - CSW01_17075 0.55 +0.0
506,639 - CSW01_17075 0.55 +0.1
506,737 + CSW01_17075 0.87 -0.5
506,745 - CSW01_17075 0.89 +0.4
507,029 - CSW01_17080 0.64 -0.4
507,052 + CSW01_17080 0.70 -0.4
507,319 + -2.6
507,367 - +0.1

Or see this region's nucleotide sequence