Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16555 and CSW01_16560 are separated by 98 nucleotides CSW01_16560 and CSW01_16565 overlap by 14 nucleotides CSW01_16565 and CSW01_16570 are separated by 136 nucleotides CSW01_16570 and CSW01_16575 are separated by 11 nucleotides CSW01_16575 and CSW01_16580 are separated by 280 nucleotides
CSW01_16550: CSW01_16550 - DUF1196 domain-containing protein, at 412,819 to 412,977
_16550
CSW01_16555: CSW01_16555 - transcriptional regulator, at 412,894 to 413,031
_16555
CSW01_16560: CSW01_16560 - toxin HigB-2, at 413,130 to 413,462
_16560
CSW01_16565: CSW01_16565 - transcriptional regulator, at 413,449 to 413,763
_16565
CSW01_16570: CSW01_16570 - N-acetyltransferase, at 413,900 to 414,334
_16570
CSW01_16575: CSW01_16575 - acetyltransferase, at 414,346 to 414,501
_16575
CSW01_16580: CSW01_16580 - IS5 family transposase ISVch5, at 414,782 to 415,762
_16580
Position (kb) 413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 413.047 kb on - strand at 413.083 kb on - strand at 413.196 kb on + strand, within CSW01_16560 at 413.198 kb on + strand, within CSW01_16560 at 413.198 kb on + strand, within CSW01_16560 at 413.198 kb on + strand, within CSW01_16560 at 413.198 kb on + strand, within CSW01_16560 at 413.206 kb on - strand, within CSW01_16560 at 413.207 kb on + strand, within CSW01_16560 at 413.207 kb on + strand, within CSW01_16560 at 413.207 kb on + strand, within CSW01_16560 at 413.230 kb on + strand, within CSW01_16560 at 413.238 kb on - strand, within CSW01_16560 at 413.353 kb on - strand, within CSW01_16560 at 414.040 kb on - strand, within CSW01_16570 at 414.077 kb on + strand, within CSW01_16570 at 414.077 kb on + strand, within CSW01_16570 at 414.077 kb on + strand, within CSW01_16570 at 414.100 kb on - strand, within CSW01_16570 at 414.129 kb on + strand, within CSW01_16570 at 414.319 kb on - strand at 414.321 kb on + strand at 414.329 kb on + strand at 414.362 kb on - strand, within CSW01_16575 at 414.364 kb on - strand, within CSW01_16575
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A remove 413,047 - +0.5 413,083 - -0.2 413,196 + CSW01_16560 0.20 +0.9 413,198 + CSW01_16560 0.20 -0.9 413,198 + CSW01_16560 0.20 +0.3 413,198 + CSW01_16560 0.20 -0.1 413,198 + CSW01_16560 0.20 -0.4 413,206 - CSW01_16560 0.23 -0.5 413,207 + CSW01_16560 0.23 -0.7 413,207 + CSW01_16560 0.23 +0.6 413,207 + CSW01_16560 0.23 +1.1 413,230 + CSW01_16560 0.30 -0.0 413,238 - CSW01_16560 0.32 +0.1 413,353 - CSW01_16560 0.67 +0.1 414,040 - CSW01_16570 0.32 +0.1 414,077 + CSW01_16570 0.41 -2.8 414,077 + CSW01_16570 0.41 +1.2 414,077 + CSW01_16570 0.41 +0.8 414,100 - CSW01_16570 0.46 -1.2 414,129 + CSW01_16570 0.53 -1.8 414,319 - -0.4 414,321 + -1.0 414,329 + +1.6 414,362 - CSW01_16575 0.10 -0.5 414,364 - CSW01_16575 0.12 -0.5
Or see this region's nucleotide sequence