Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15740 and CSW01_15745 are separated by 144 nucleotides CSW01_15745 and CSW01_15750 are separated by 157 nucleotides CSW01_15750 and CSW01_15755 overlap by 8 nucleotides CSW01_15755 and CSW01_15760 are separated by 115 nucleotides CSW01_15760 and CSW01_15765 overlap by 28 nucleotides CSW01_15765 and CSW01_15770 are separated by 146 nucleotides
CSW01_15740: CSW01_15740 - hypothetical protein, at 336,501 to 337,007
_15740
CSW01_15745: CSW01_15745 - VOC family virulence protein, at 337,152 to 337,550
_15745
CSW01_15750: CSW01_15750 - hypothetical protein, at 337,708 to 338,010
_15750
CSW01_15755: CSW01_15755 - hypothetical protein, at 338,003 to 338,089
_15755
CSW01_15760: CSW01_15760 - TIGR03643 family protein, at 338,205 to 338,456
_15760
CSW01_15765: CSW01_15765 - DUF3265 domain-containing protein, at 338,429 to 338,578
_15765
CSW01_15770: CSW01_15770 - hypothetical protein, at 338,725 to 339,150
_15770
Position (kb) 338
339 Strain fitness (log2 ratio) -2
-1
0
1 at 337.030 kb on - strand at 337.030 kb on - strand at 337.804 kb on + strand, within CSW01_15750 at 337.812 kb on - strand, within CSW01_15750 at 337.849 kb on - strand, within CSW01_15750 at 337.851 kb on + strand, within CSW01_15750 at 337.858 kb on - strand, within CSW01_15750 at 337.895 kb on + strand, within CSW01_15750 at 337.902 kb on + strand, within CSW01_15750 at 337.902 kb on + strand, within CSW01_15750 at 337.905 kb on - strand, within CSW01_15750 at 337.907 kb on + strand, within CSW01_15750 at 337.910 kb on - strand, within CSW01_15750 at 338.025 kb on - strand, within CSW01_15755 at 338.039 kb on - strand, within CSW01_15755 at 338.566 kb on + strand at 338.566 kb on + strand at 338.571 kb on + strand at 338.571 kb on + strand at 338.571 kb on + strand at 338.571 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A remove 337,030 - -1.0 337,030 - -0.1 337,804 + CSW01_15750 0.32 -1.0 337,812 - CSW01_15750 0.34 -0.9 337,849 - CSW01_15750 0.47 -1.1 337,851 + CSW01_15750 0.47 +0.3 337,858 - CSW01_15750 0.50 -0.8 337,895 + CSW01_15750 0.62 -0.2 337,902 + CSW01_15750 0.64 -0.8 337,902 + CSW01_15750 0.64 -0.2 337,905 - CSW01_15750 0.65 -0.2 337,907 + CSW01_15750 0.66 -0.3 337,910 - CSW01_15750 0.67 +0.6 338,025 - CSW01_15755 0.25 -1.2 338,039 - CSW01_15755 0.41 -0.6 338,566 + -0.8 338,566 + +1.0 338,571 + -2.1 338,571 + -0.1 338,571 + +0.4 338,571 + -0.3
Or see this region's nucleotide sequence