Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15595

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15575 and CSW01_15580 are separated by 69 nucleotidesCSW01_15580 and CSW01_15585 are separated by 218 nucleotidesCSW01_15585 and CSW01_15590 are separated by 96 nucleotidesCSW01_15590 and CSW01_15595 are separated by 51 nucleotidesCSW01_15595 and CSW01_15600 are separated by 2 nucleotidesCSW01_15600 and CSW01_15605 are separated by 58 nucleotidesCSW01_15605 and CSW01_15610 overlap by 35 nucleotidesCSW01_15610 and CSW01_15615 are separated by 50 nucleotidesCSW01_15615 and CSW01_15620 are separated by 72 nucleotides CSW01_15575: CSW01_15575 - DUF1778 domain-containing protein, at 324,564 to 324,836 _15575 CSW01_15580: CSW01_15580 - hypothetical protein, at 324,906 to 325,010 _15580 CSW01_15585: CSW01_15585 - DUF645 domain-containing protein, at 325,229 to 325,354 _15585 CSW01_15590: CSW01_15590 - hypothetical protein, at 325,451 to 325,546 _15590 CSW01_15595: CSW01_15595 - hypothetical protein, at 325,598 to 326,050 _15595 CSW01_15600: CSW01_15600 - hypothetical protein, at 326,053 to 326,139 _15600 CSW01_15605: CSW01_15605 - type II toxin-antitoxin system YafQ family toxin, at 326,198 to 326,494 _15605 CSW01_15610: CSW01_15610 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 326,460 to 326,738 _15610 CSW01_15615: CSW01_15615 - DUF3265 domain-containing protein, at 326,789 to 326,906 _15615 CSW01_15620: CSW01_15620 - DUF3709 domain-containing protein, at 326,979 to 327,302 _15620 Position (kb) 325 326 327Strain fitness (log2 ratio) -2 -1 0 1 2at 325.308 kb on + strand, within CSW01_15585at 325.316 kb on - strand, within CSW01_15585at 325.316 kb on - strand, within CSW01_15585at 325.316 kb on - strand, within CSW01_15585at 325.598 kb on - strandat 325.654 kb on + strand, within CSW01_15595at 325.662 kb on - strand, within CSW01_15595at 325.662 kb on - strand, within CSW01_15595at 326.075 kb on - strand, within CSW01_15600at 326.187 kb on + strandat 326.232 kb on + strand, within CSW01_15605at 326.240 kb on - strand, within CSW01_15605at 326.240 kb on - strand, within CSW01_15605at 326.267 kb on + strand, within CSW01_15605at 326.269 kb on - strand, within CSW01_15605at 326.269 kb on - strand, within CSW01_15605at 326.277 kb on + strand, within CSW01_15605at 326.285 kb on - strand, within CSW01_15605at 326.465 kb on - strandat 326.781 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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325,308 + CSW01_15585 0.63 -0.6
325,316 - CSW01_15585 0.69 -0.8
325,316 - CSW01_15585 0.69 -0.8
325,316 - CSW01_15585 0.69 -0.5
325,598 - -0.8
325,654 + CSW01_15595 0.12 +0.6
325,662 - CSW01_15595 0.14 +0.5
325,662 - CSW01_15595 0.14 +1.8
326,075 - CSW01_15600 0.25 +1.0
326,187 + -1.8
326,232 + CSW01_15605 0.11 -0.1
326,240 - CSW01_15605 0.14 +1.3
326,240 - CSW01_15605 0.14 +0.4
326,267 + CSW01_15605 0.23 +0.2
326,269 - CSW01_15605 0.24 +0.2
326,269 - CSW01_15605 0.24 +1.7
326,277 + CSW01_15605 0.27 +0.1
326,285 - CSW01_15605 0.29 -0.2
326,465 - -0.0
326,781 + +0.3

Or see this region's nucleotide sequence