Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15535

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15520 and CSW01_15525 are separated by 153 nucleotidesCSW01_15525 and CSW01_15530 are separated by 0 nucleotidesCSW01_15530 and CSW01_15535 are separated by 243 nucleotidesCSW01_15535 and CSW01_15540 are separated by 56 nucleotidesCSW01_15540 and CSW01_15545 overlap by 52 nucleotidesCSW01_15545 and CSW01_15550 overlap by 25 nucleotidesCSW01_15550 and CSW01_15555 are separated by 123 nucleotides CSW01_15520: CSW01_15520 - hypothetical protein, at 320,347 to 320,712 _15520 CSW01_15525: CSW01_15525 - type II toxin-antitoxin system RelE/ParE family toxin, at 320,866 to 321,201 _15525 CSW01_15530: CSW01_15530 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 321,202 to 321,444 _15530 CSW01_15535: CSW01_15535 - NUDIX hydrolase, at 321,688 to 322,074 _15535 CSW01_15540: CSW01_15540 - acetyltransferase, at 322,131 to 322,244 _15540 CSW01_15545: CSW01_15545 - DUF1289 domain-containing protein, at 322,193 to 322,474 _15545 CSW01_15550: CSW01_15550 - DUF1196 domain-containing protein, at 322,450 to 322,608 _15550 CSW01_15555: CSW01_15555 - N-acetyltransferase, at 322,732 to 323,268 _15555 Position (kb) 321 322 323Strain fitness (log2 ratio) -2 -1 0 1at 320.705 kb on + strandat 320.713 kb on - strandat 320.723 kb on - strandat 320.723 kb on - strandat 321.661 kb on + strandat 321.669 kb on - strandat 321.788 kb on + strand, within CSW01_15535at 321.788 kb on + strand, within CSW01_15535at 321.930 kb on - strand, within CSW01_15535at 321.949 kb on - strand, within CSW01_15535at 321.989 kb on + strand, within CSW01_15535

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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320,705 + +0.0
320,713 - +1.0
320,723 - -0.1
320,723 - -0.8
321,661 + +0.3
321,669 - -1.8
321,788 + CSW01_15535 0.26 -0.6
321,788 + CSW01_15535 0.26 -0.9
321,930 - CSW01_15535 0.63 -0.8
321,949 - CSW01_15535 0.67 -0.4
321,989 + CSW01_15535 0.78 -0.0

Or see this region's nucleotide sequence