Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15060

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15055 and CSW01_15060 are separated by 213 nucleotidesCSW01_15060 and CSW01_15065 overlap by 10 nucleotides CSW01_15055: CSW01_15055 - Bcr/CflA family drug resistance efflux transporter, at 232,444 to 233,688 _15055 CSW01_15060: CSW01_15060 - hypothetical protein, at 233,902 to 234,168 _15060 CSW01_15065: CSW01_15065 - GGDEF domain-containing protein, at 234,159 to 235,238 _15065 Position (kb) 233 234 235Strain fitness (log2 ratio) -3 -2 -1 0 1at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 233.020 kb on - strand, within CSW01_15055at 233.089 kb on + strand, within CSW01_15055at 233.089 kb on + strand, within CSW01_15055at 233.089 kb on + strand, within CSW01_15055at 233.098 kb on - strand, within CSW01_15055at 233.113 kb on + strand, within CSW01_15055at 233.118 kb on + strand, within CSW01_15055at 233.139 kb on - strand, within CSW01_15055at 233.174 kb on - strand, within CSW01_15055at 233.192 kb on + strand, within CSW01_15055at 233.199 kb on - strand, within CSW01_15055at 233.200 kb on - strand, within CSW01_15055at 233.297 kb on - strand, within CSW01_15055at 233.316 kb on - strand, within CSW01_15055at 233.319 kb on + strand, within CSW01_15055at 233.319 kb on + strand, within CSW01_15055at 233.327 kb on - strand, within CSW01_15055at 233.331 kb on + strand, within CSW01_15055at 233.366 kb on + strand, within CSW01_15055at 233.536 kb on + strand, within CSW01_15055at 233.544 kb on - strand, within CSW01_15055at 233.595 kb on - strandat 233.738 kb on + strandat 233.849 kb on + strandat 233.904 kb on - strandat 233.961 kb on + strand, within CSW01_15060at 233.969 kb on - strand, within CSW01_15060at 234.062 kb on - strand, within CSW01_15060at 234.099 kb on - strand, within CSW01_15060at 234.108 kb on + strand, within CSW01_15060at 234.186 kb on - strandat 234.205 kb on + strandat 234.213 kb on - strandat 234.270 kb on + strand, within CSW01_15065at 234.289 kb on + strand, within CSW01_15065at 234.362 kb on + strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.482 kb on + strand, within CSW01_15065at 234.541 kb on + strand, within CSW01_15065at 234.581 kb on + strand, within CSW01_15065at 234.752 kb on - strand, within CSW01_15065at 234.779 kb on + strand, within CSW01_15065

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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232,927 + CSW01_15055 0.39 -0.1
232,927 + CSW01_15055 0.39 +0.1
232,927 + CSW01_15055 0.39 -0.8
232,927 + CSW01_15055 0.39 -0.5
232,927 + CSW01_15055 0.39 +0.9
232,927 + CSW01_15055 0.39 -0.1
232,927 + CSW01_15055 0.39 -0.1
232,935 - CSW01_15055 0.39 +0.3
232,935 - CSW01_15055 0.39 +0.2
232,935 - CSW01_15055 0.39 +0.1
232,935 - CSW01_15055 0.39 -1.2
232,935 - CSW01_15055 0.39 +0.3
233,020 - CSW01_15055 0.46 -0.3
233,089 + CSW01_15055 0.52 +0.6
233,089 + CSW01_15055 0.52 -0.1
233,089 + CSW01_15055 0.52 -1.0
233,098 - CSW01_15055 0.53 +0.8
233,113 + CSW01_15055 0.54 +0.2
233,118 + CSW01_15055 0.54 +0.4
233,139 - CSW01_15055 0.56 +0.6
233,174 - CSW01_15055 0.59 -0.3
233,192 + CSW01_15055 0.60 -0.3
233,199 - CSW01_15055 0.61 +0.3
233,200 - CSW01_15055 0.61 +0.3
233,297 - CSW01_15055 0.69 -0.4
233,316 - CSW01_15055 0.70 +0.0
233,319 + CSW01_15055 0.70 +0.8
233,319 + CSW01_15055 0.70 +0.5
233,327 - CSW01_15055 0.71 -0.7
233,331 + CSW01_15055 0.71 -0.7
233,366 + CSW01_15055 0.74 +0.5
233,536 + CSW01_15055 0.88 +0.2
233,544 - CSW01_15055 0.88 +0.0
233,595 - +0.1
233,738 + -0.1
233,849 + +0.1
233,904 - -0.1
233,961 + CSW01_15060 0.22 -0.6
233,969 - CSW01_15060 0.25 -1.0
234,062 - CSW01_15060 0.60 -3.6
234,099 - CSW01_15060 0.74 +0.0
234,108 + CSW01_15060 0.77 +0.8
234,186 - -0.5
234,205 + -3.6
234,213 - +0.5
234,270 + CSW01_15065 0.10 +0.8
234,289 + CSW01_15065 0.12 +1.0
234,362 + CSW01_15065 0.19 +0.6
234,370 - CSW01_15065 0.20 -0.3
234,370 - CSW01_15065 0.20 -0.8
234,370 - CSW01_15065 0.20 -0.1
234,370 - CSW01_15065 0.20 -0.7
234,482 + CSW01_15065 0.30 +0.4
234,541 + CSW01_15065 0.35 +0.6
234,581 + CSW01_15065 0.39 -0.9
234,752 - CSW01_15065 0.55 -0.4
234,779 + CSW01_15065 0.57 +1.2

Or see this region's nucleotide sequence