Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14880

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_14870 and CSW01_14875 are separated by 56 nucleotidesCSW01_14875 and CSW01_14880 are separated by 275 nucleotidesCSW01_14880 and CSW01_14885 are separated by 645 nucleotides CSW01_14870: CSW01_14870 - methyl-accepting chemotaxis protein, at 192,829 to 194,763 _14870 CSW01_14875: CSW01_14875 - chromosome partitioning protein ParA, at 194,820 to 195,023 _14875 CSW01_14880: CSW01_14880 - DsbA family protein, at 195,299 to 195,952 _14880 CSW01_14885: CSW01_14885 - NupC/NupG family nucleoside CNT transporter, at 196,598 to 197,806 _14885 Position (kb) 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 194.374 kb on + strand, within CSW01_14870at 194.374 kb on + strand, within CSW01_14870at 194.494 kb on + strand, within CSW01_14870at 194.494 kb on + strand, within CSW01_14870at 194.530 kb on + strand, within CSW01_14870at 194.596 kb on + strandat 194.622 kb on - strandat 194.624 kb on + strandat 194.624 kb on + strandat 194.750 kb on + strandat 194.750 kb on + strandat 194.750 kb on + strandat 194.758 kb on - strandat 194.758 kb on - strandat 194.758 kb on - strandat 194.758 kb on - strandat 194.760 kb on + strandat 194.812 kb on + strandat 194.886 kb on + strand, within CSW01_14875at 194.959 kb on + strand, within CSW01_14875at 195.024 kb on + strandat 195.048 kb on - strandat 195.186 kb on - strandat 195.434 kb on + strand, within CSW01_14880at 195.444 kb on + strand, within CSW01_14880at 195.444 kb on + strand, within CSW01_14880at 195.444 kb on + strand, within CSW01_14880at 195.444 kb on + strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.456 kb on + strand, within CSW01_14880at 195.502 kb on + strand, within CSW01_14880at 195.502 kb on + strand, within CSW01_14880at 195.533 kb on - strand, within CSW01_14880at 195.560 kb on + strand, within CSW01_14880at 195.593 kb on + strand, within CSW01_14880at 195.594 kb on - strand, within CSW01_14880at 195.594 kb on - strand, within CSW01_14880at 195.594 kb on - strand, within CSW01_14880at 195.601 kb on - strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.751 kb on + strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.787 kb on + strand, within CSW01_14880at 195.829 kb on + strand, within CSW01_14880at 195.909 kb on + strandat 195.909 kb on + strandat 196.051 kb on - strandat 196.096 kb on - strandat 196.108 kb on - strandat 196.158 kb on + strandat 196.227 kb on - strandat 196.387 kb on + strandat 196.446 kb on + strandat 196.454 kb on - strandat 196.528 kb on - strandat 196.636 kb on + strandat 196.760 kb on + strand, within CSW01_14885at 196.784 kb on - strand, within CSW01_14885at 196.920 kb on + strand, within CSW01_14885at 196.921 kb on + strand, within CSW01_14885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
remove
194,374 + CSW01_14870 0.80 -0.3
194,374 + CSW01_14870 0.80 +0.1
194,494 + CSW01_14870 0.86 -0.4
194,494 + CSW01_14870 0.86 -0.8
194,530 + CSW01_14870 0.88 +1.9
194,596 + +0.5
194,622 - -1.2
194,624 + -0.2
194,624 + -0.3
194,750 + -0.4
194,750 + -0.1
194,750 + -0.2
194,758 - -0.4
194,758 - +2.6
194,758 - +0.1
194,758 - +0.3
194,760 + -0.0
194,812 + +1.5
194,886 + CSW01_14875 0.32 +1.0
194,959 + CSW01_14875 0.68 +1.1
195,024 + +0.7
195,048 - -0.0
195,186 - +1.1
195,434 + CSW01_14880 0.21 -0.4
195,444 + CSW01_14880 0.22 +2.0
195,444 + CSW01_14880 0.22 +0.5
195,444 + CSW01_14880 0.22 -0.6
195,444 + CSW01_14880 0.22 +0.3
195,452 - CSW01_14880 0.23 -0.1
195,452 - CSW01_14880 0.23 +0.6
195,452 - CSW01_14880 0.23 -0.1
195,452 - CSW01_14880 0.23 +0.3
195,452 - CSW01_14880 0.23 -0.2
195,452 - CSW01_14880 0.23 -0.5
195,452 - CSW01_14880 0.23 -0.2
195,452 - CSW01_14880 0.23 +1.0
195,452 - CSW01_14880 0.23 +0.2
195,452 - CSW01_14880 0.23 -0.0
195,456 + CSW01_14880 0.24 +0.6
195,502 + CSW01_14880 0.31 +1.9
195,502 + CSW01_14880 0.31 +0.9
195,533 - CSW01_14880 0.36 +0.4
195,560 + CSW01_14880 0.40 +0.0
195,593 + CSW01_14880 0.45 +0.3
195,594 - CSW01_14880 0.45 +0.4
195,594 - CSW01_14880 0.45 +0.6
195,594 - CSW01_14880 0.45 +0.2
195,601 - CSW01_14880 0.46 +0.2
195,745 + CSW01_14880 0.68 +0.3
195,745 + CSW01_14880 0.68 -0.1
195,745 + CSW01_14880 0.68 +2.6
195,745 + CSW01_14880 0.68 +0.9
195,745 + CSW01_14880 0.68 +0.7
195,745 + CSW01_14880 0.68 +0.5
195,745 + CSW01_14880 0.68 -0.1
195,745 + CSW01_14880 0.68 -0.0
195,745 + CSW01_14880 0.68 -0.8
195,745 + CSW01_14880 0.68 -1.6
195,745 + CSW01_14880 0.68 -0.2
195,745 + CSW01_14880 0.68 -0.7
195,745 + CSW01_14880 0.68 +0.0
195,745 + CSW01_14880 0.68 +0.4
195,745 + CSW01_14880 0.68 -0.7
195,745 + CSW01_14880 0.68 +0.5
195,745 + CSW01_14880 0.68 +0.8
195,751 + CSW01_14880 0.69 -0.8
195,753 - CSW01_14880 0.69 -0.6
195,753 - CSW01_14880 0.69 +0.3
195,753 - CSW01_14880 0.69 +0.4
195,753 - CSW01_14880 0.69 -0.0
195,787 + CSW01_14880 0.75 +1.6
195,829 + CSW01_14880 0.81 -2.8
195,909 + -0.5
195,909 + -0.3
196,051 - +0.0
196,096 - +0.1
196,108 - +0.7
196,158 + -0.3
196,227 - -0.4
196,387 + +0.7
196,446 + -1.4
196,454 - +0.2
196,528 - -0.1
196,636 + -1.8
196,760 + CSW01_14885 0.13 -1.2
196,784 - CSW01_14885 0.15 +1.4
196,920 + CSW01_14885 0.27 +0.5
196,921 + CSW01_14885 0.27 +1.0

Or see this region's nucleotide sequence