Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14710

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14705 and CSW01_14710 are separated by 407 nucleotidesCSW01_14710 and CSW01_14715 are separated by 114 nucleotides CSW01_14705: CSW01_14705 - DUF3316 domain-containing protein, at 153,114 to 153,461 _14705 CSW01_14710: CSW01_14710 - Spindolin, at 153,869 to 155,077 _14710 CSW01_14715: CSW01_14715 - sensor histidine kinase, at 155,192 to 157,246 _14715 Position (kb) 153 154 155 156Strain fitness (log2 ratio) -2 -1 0 1 2 3at 153.066 kb on + strandat 153.066 kb on - strandat 153.154 kb on + strand, within CSW01_14705at 153.215 kb on + strand, within CSW01_14705at 153.250 kb on + strand, within CSW01_14705at 153.258 kb on - strand, within CSW01_14705at 153.265 kb on + strand, within CSW01_14705at 153.270 kb on + strand, within CSW01_14705at 153.294 kb on + strand, within CSW01_14705at 153.301 kb on + strand, within CSW01_14705at 153.309 kb on - strand, within CSW01_14705at 153.342 kb on - strand, within CSW01_14705at 153.382 kb on + strand, within CSW01_14705at 153.390 kb on - strand, within CSW01_14705at 153.540 kb on - strandat 153.575 kb on + strandat 153.583 kb on - strandat 153.583 kb on - strandat 153.656 kb on + strandat 153.660 kb on - strandat 153.720 kb on + strandat 153.720 kb on + strandat 153.730 kb on + strandat 153.739 kb on + strandat 153.747 kb on - strandat 153.747 kb on - strandat 153.907 kb on - strandat 153.952 kb on - strandat 153.973 kb on + strandat 153.981 kb on - strandat 154.088 kb on - strand, within CSW01_14710at 154.117 kb on - strand, within CSW01_14710at 154.357 kb on + strand, within CSW01_14710at 154.375 kb on + strand, within CSW01_14710at 154.468 kb on + strand, within CSW01_14710at 154.506 kb on + strand, within CSW01_14710at 154.563 kb on + strand, within CSW01_14710at 154.563 kb on + strand, within CSW01_14710at 154.581 kb on + strand, within CSW01_14710at 154.609 kb on - strand, within CSW01_14710at 154.638 kb on + strand, within CSW01_14710at 154.645 kb on - strand, within CSW01_14710at 154.646 kb on - strand, within CSW01_14710at 154.646 kb on - strand, within CSW01_14710at 154.646 kb on - strand, within CSW01_14710at 154.649 kb on + strand, within CSW01_14710at 154.657 kb on - strand, within CSW01_14710at 154.657 kb on - strand, within CSW01_14710at 154.673 kb on - strand, within CSW01_14710at 154.688 kb on - strand, within CSW01_14710at 154.688 kb on - strand, within CSW01_14710at 154.766 kb on + strand, within CSW01_14710at 154.870 kb on - strand, within CSW01_14710at 154.870 kb on - strand, within CSW01_14710at 154.882 kb on + strand, within CSW01_14710at 154.909 kb on + strand, within CSW01_14710at 154.915 kb on + strand, within CSW01_14710at 154.966 kb on + strandat 154.968 kb on - strandat 154.974 kb on - strandat 155.005 kb on + strandat 155.010 kb on + strandat 155.013 kb on - strandat 155.013 kb on - strandat 155.015 kb on + strandat 155.033 kb on + strandat 155.049 kb on + strandat 155.049 kb on - strandat 155.064 kb on - strandat 155.157 kb on - strandat 155.259 kb on - strandat 155.262 kb on - strandat 155.305 kb on + strandat 155.305 kb on + strandat 155.305 kb on + strandat 155.306 kb on + strandat 155.306 kb on + strandat 155.306 kb on + strandat 155.308 kb on - strandat 155.314 kb on - strandat 155.341 kb on - strandat 155.343 kb on + strandat 155.416 kb on - strand, within CSW01_14715at 155.452 kb on - strand, within CSW01_14715at 155.456 kb on + strand, within CSW01_14715at 155.457 kb on - strand, within CSW01_14715at 155.457 kb on - strand, within CSW01_14715at 155.521 kb on - strand, within CSW01_14715at 155.606 kb on + strand, within CSW01_14715at 155.643 kb on + strand, within CSW01_14715at 155.727 kb on - strand, within CSW01_14715at 155.770 kb on - strand, within CSW01_14715at 155.779 kb on + strand, within CSW01_14715at 155.787 kb on - strand, within CSW01_14715at 155.799 kb on + strand, within CSW01_14715at 155.889 kb on + strand, within CSW01_14715at 155.897 kb on - strand, within CSW01_14715at 155.899 kb on - strand, within CSW01_14715at 155.911 kb on + strand, within CSW01_14715at 155.911 kb on + strand, within CSW01_14715at 155.911 kb on + strand, within CSW01_14715at 155.919 kb on - strand, within CSW01_14715at 155.919 kb on - strand, within CSW01_14715at 156.013 kb on + strand, within CSW01_14715at 156.013 kb on + strand, within CSW01_14715at 156.021 kb on - strand, within CSW01_14715at 156.021 kb on - strand, within CSW01_14715at 156.038 kb on + strand, within CSW01_14715at 156.046 kb on - strand, within CSW01_14715

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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153,066 + +1.2
153,066 - +0.1
153,154 + CSW01_14705 0.11 +0.2
153,215 + CSW01_14705 0.29 +0.3
153,250 + CSW01_14705 0.39 -1.5
153,258 - CSW01_14705 0.41 -1.4
153,265 + CSW01_14705 0.43 -1.0
153,270 + CSW01_14705 0.45 -0.6
153,294 + CSW01_14705 0.52 +0.7
153,301 + CSW01_14705 0.54 +0.2
153,309 - CSW01_14705 0.56 -0.3
153,342 - CSW01_14705 0.66 +0.1
153,382 + CSW01_14705 0.77 +0.9
153,390 - CSW01_14705 0.79 +0.3
153,540 - -0.1
153,575 + +0.0
153,583 - -0.8
153,583 - -0.2
153,656 + -0.4
153,660 - -0.0
153,720 + -0.3
153,720 + +0.6
153,730 + -0.2
153,739 + +0.4
153,747 - -0.7
153,747 - +1.0
153,907 - +1.2
153,952 - +1.0
153,973 + +0.4
153,981 - +0.6
154,088 - CSW01_14710 0.18 -0.1
154,117 - CSW01_14710 0.21 +1.2
154,357 + CSW01_14710 0.40 +0.2
154,375 + CSW01_14710 0.42 -0.1
154,468 + CSW01_14710 0.50 -0.1
154,506 + CSW01_14710 0.53 -0.6
154,563 + CSW01_14710 0.57 +0.6
154,563 + CSW01_14710 0.57 +0.3
154,581 + CSW01_14710 0.59 +0.8
154,609 - CSW01_14710 0.61 +0.8
154,638 + CSW01_14710 0.64 -2.4
154,645 - CSW01_14710 0.64 +1.2
154,646 - CSW01_14710 0.64 -0.4
154,646 - CSW01_14710 0.64 -0.4
154,646 - CSW01_14710 0.64 +0.7
154,649 + CSW01_14710 0.65 -0.1
154,657 - CSW01_14710 0.65 +0.5
154,657 - CSW01_14710 0.65 -0.3
154,673 - CSW01_14710 0.67 +0.0
154,688 - CSW01_14710 0.68 +0.4
154,688 - CSW01_14710 0.68 +0.3
154,766 + CSW01_14710 0.74 -0.2
154,870 - CSW01_14710 0.83 -0.7
154,870 - CSW01_14710 0.83 +0.9
154,882 + CSW01_14710 0.84 +0.6
154,909 + CSW01_14710 0.86 +1.6
154,915 + CSW01_14710 0.87 -2.4
154,966 + -0.0
154,968 - +0.5
154,974 - -1.0
155,005 + -0.3
155,010 + +0.2
155,013 - -0.4
155,013 - +1.0
155,015 + +0.1
155,033 + +2.9
155,049 + -0.3
155,049 - +1.5
155,064 - +0.6
155,157 - -0.1
155,259 - -0.3
155,262 - -0.1
155,305 + +0.3
155,305 + -0.6
155,305 + +0.1
155,306 + -0.7
155,306 + -0.4
155,306 + +0.5
155,308 - +0.1
155,314 - -0.1
155,341 - +0.6
155,343 + +0.9
155,416 - CSW01_14715 0.11 +3.2
155,452 - CSW01_14715 0.13 -0.6
155,456 + CSW01_14715 0.13 +0.6
155,457 - CSW01_14715 0.13 -1.0
155,457 - CSW01_14715 0.13 +0.5
155,521 - CSW01_14715 0.16 -1.1
155,606 + CSW01_14715 0.20 -0.0
155,643 + CSW01_14715 0.22 -0.0
155,727 - CSW01_14715 0.26 -0.1
155,770 - CSW01_14715 0.28 -0.4
155,779 + CSW01_14715 0.29 +0.6
155,787 - CSW01_14715 0.29 -0.3
155,799 + CSW01_14715 0.30 +0.2
155,889 + CSW01_14715 0.34 -0.4
155,897 - CSW01_14715 0.34 -0.0
155,899 - CSW01_14715 0.34 +0.3
155,911 + CSW01_14715 0.35 -0.6
155,911 + CSW01_14715 0.35 +0.7
155,911 + CSW01_14715 0.35 -0.3
155,919 - CSW01_14715 0.35 -0.4
155,919 - CSW01_14715 0.35 -0.8
156,013 + CSW01_14715 0.40 +0.5
156,013 + CSW01_14715 0.40 +0.4
156,021 - CSW01_14715 0.40 -0.8
156,021 - CSW01_14715 0.40 +0.2
156,038 + CSW01_14715 0.41 +0.9
156,046 - CSW01_14715 0.42 +0.5

Or see this region's nucleotide sequence