Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14665

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14660 and CSW01_14665 are separated by 138 nucleotidesCSW01_14665 and CSW01_14670 are separated by 10 nucleotides CSW01_14660: CSW01_14660 - ribose ABC transporter substrate-binding protein RbsB, at 144,690 to 145,574 _14660 CSW01_14665: CSW01_14665 - ribokinase, at 145,713 to 146,633 _14665 CSW01_14670: CSW01_14670 - transcriptional repressor PurR, at 146,644 to 147,648 _14670 Position (kb) 145 146 147Strain fitness (log2 ratio) -2 -1 0 1 2at 144.770 kb on - strandat 144.800 kb on - strand, within CSW01_14660at 144.856 kb on + strand, within CSW01_14660at 144.870 kb on + strand, within CSW01_14660at 144.919 kb on + strand, within CSW01_14660at 144.927 kb on - strand, within CSW01_14660at 144.927 kb on - strand, within CSW01_14660at 144.927 kb on - strand, within CSW01_14660at 145.017 kb on + strand, within CSW01_14660at 145.168 kb on + strand, within CSW01_14660at 145.262 kb on + strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.278 kb on - strand, within CSW01_14660at 145.358 kb on - strand, within CSW01_14660at 145.467 kb on - strand, within CSW01_14660at 145.481 kb on - strand, within CSW01_14660at 145.500 kb on - strandat 145.586 kb on - strandat 145.658 kb on + strandat 145.666 kb on - strandat 145.699 kb on - strandat 145.701 kb on + strandat 145.711 kb on - strandat 145.711 kb on - strandat 145.747 kb on - strandat 145.752 kb on - strandat 145.930 kb on + strand, within CSW01_14665at 145.960 kb on + strand, within CSW01_14665at 146.019 kb on + strand, within CSW01_14665at 146.019 kb on + strand, within CSW01_14665at 146.027 kb on - strand, within CSW01_14665at 146.041 kb on + strand, within CSW01_14665at 146.057 kb on - strand, within CSW01_14665at 146.134 kb on - strand, within CSW01_14665at 146.220 kb on - strand, within CSW01_14665at 146.242 kb on + strand, within CSW01_14665at 146.247 kb on + strand, within CSW01_14665at 146.248 kb on - strand, within CSW01_14665at 146.269 kb on - strand, within CSW01_14665at 146.334 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.349 kb on + strand, within CSW01_14665at 146.350 kb on - strand, within CSW01_14665at 146.365 kb on + strand, within CSW01_14665at 146.393 kb on - strand, within CSW01_14665at 146.394 kb on - strand, within CSW01_14665at 146.463 kb on + strand, within CSW01_14665at 146.479 kb on - strand, within CSW01_14665at 146.487 kb on - strand, within CSW01_14665at 146.487 kb on - strand, within CSW01_14665at 146.543 kb on - strandat 146.594 kb on - strandat 146.881 kb on + strand, within CSW01_14670at 146.882 kb on + strand, within CSW01_14670at 146.890 kb on - strand, within CSW01_14670at 146.908 kb on + strand, within CSW01_14670at 146.908 kb on + strand, within CSW01_14670at 146.908 kb on + strand, within CSW01_14670at 146.908 kb on + strand, within CSW01_14670at 146.915 kb on + strand, within CSW01_14670at 146.917 kb on - strand, within CSW01_14670at 146.917 kb on - strand, within CSW01_14670at 146.964 kb on + strand, within CSW01_14670at 146.964 kb on + strand, within CSW01_14670at 146.972 kb on - strand, within CSW01_14670at 147.040 kb on - strand, within CSW01_14670at 147.141 kb on + strand, within CSW01_14670at 147.159 kb on + strand, within CSW01_14670at 147.173 kb on - strand, within CSW01_14670at 147.178 kb on - strand, within CSW01_14670at 147.178 kb on - strand, within CSW01_14670at 147.220 kb on + strand, within CSW01_14670at 147.220 kb on - strand, within CSW01_14670at 147.225 kb on - strand, within CSW01_14670at 147.357 kb on + strand, within CSW01_14670at 147.474 kb on - strand, within CSW01_14670at 147.483 kb on + strand, within CSW01_14670at 147.491 kb on - strand, within CSW01_14670at 147.491 kb on - strand, within CSW01_14670at 147.491 kb on - strand, within CSW01_14670at 147.491 kb on - strand, within CSW01_14670at 147.553 kb on - strandat 147.563 kb on - strandat 147.599 kb on + strandat 147.611 kb on + strandat 147.619 kb on + strandat 147.629 kb on - strandat 147.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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144,770 - +0.1
144,800 - CSW01_14660 0.12 -0.0
144,856 + CSW01_14660 0.19 +0.4
144,870 + CSW01_14660 0.20 +0.8
144,919 + CSW01_14660 0.26 +0.4
144,927 - CSW01_14660 0.27 -0.5
144,927 - CSW01_14660 0.27 +0.7
144,927 - CSW01_14660 0.27 +1.2
145,017 + CSW01_14660 0.37 -0.1
145,168 + CSW01_14660 0.54 +0.5
145,262 + CSW01_14660 0.65 +0.1
145,270 - CSW01_14660 0.66 +0.5
145,270 - CSW01_14660 0.66 -0.4
145,270 - CSW01_14660 0.66 +0.2
145,270 - CSW01_14660 0.66 +0.0
145,270 - CSW01_14660 0.66 -0.3
145,278 - CSW01_14660 0.66 +0.3
145,358 - CSW01_14660 0.75 +0.7
145,467 - CSW01_14660 0.88 +0.6
145,481 - CSW01_14660 0.89 +0.5
145,500 - +0.5
145,586 - +1.0
145,658 + +0.5
145,666 - +0.2
145,699 - -0.1
145,701 + +0.5
145,711 - +0.0
145,711 - -1.2
145,747 - +0.7
145,752 - +0.7
145,930 + CSW01_14665 0.24 -0.2
145,960 + CSW01_14665 0.27 -0.2
146,019 + CSW01_14665 0.33 +0.4
146,019 + CSW01_14665 0.33 -0.3
146,027 - CSW01_14665 0.34 -0.1
146,041 + CSW01_14665 0.36 -0.5
146,057 - CSW01_14665 0.37 +1.0
146,134 - CSW01_14665 0.46 -1.0
146,220 - CSW01_14665 0.55 +0.7
146,242 + CSW01_14665 0.57 +0.5
146,247 + CSW01_14665 0.58 -0.2
146,248 - CSW01_14665 0.58 +0.2
146,269 - CSW01_14665 0.60 +0.4
146,334 + CSW01_14665 0.67 +0.2
146,342 + CSW01_14665 0.68 -0.4
146,342 + CSW01_14665 0.68 -0.1
146,342 + CSW01_14665 0.68 +0.7
146,342 + CSW01_14665 0.68 +0.0
146,342 + CSW01_14665 0.68 +0.3
146,349 + CSW01_14665 0.69 +0.2
146,350 - CSW01_14665 0.69 +0.2
146,365 + CSW01_14665 0.71 +1.0
146,393 - CSW01_14665 0.74 +0.4
146,394 - CSW01_14665 0.74 +0.7
146,463 + CSW01_14665 0.81 -0.2
146,479 - CSW01_14665 0.83 +1.6
146,487 - CSW01_14665 0.84 +0.1
146,487 - CSW01_14665 0.84 -1.2
146,543 - -0.8
146,594 - +0.2
146,881 + CSW01_14670 0.24 +0.0
146,882 + CSW01_14670 0.24 +0.3
146,890 - CSW01_14670 0.24 +0.0
146,908 + CSW01_14670 0.26 -1.3
146,908 + CSW01_14670 0.26 +0.5
146,908 + CSW01_14670 0.26 -0.4
146,908 + CSW01_14670 0.26 -1.0
146,915 + CSW01_14670 0.27 -0.2
146,917 - CSW01_14670 0.27 -1.2
146,917 - CSW01_14670 0.27 +0.4
146,964 + CSW01_14670 0.32 +0.4
146,964 + CSW01_14670 0.32 -2.2
146,972 - CSW01_14670 0.33 -0.8
147,040 - CSW01_14670 0.39 +1.2
147,141 + CSW01_14670 0.49 +0.2
147,159 + CSW01_14670 0.51 +0.0
147,173 - CSW01_14670 0.53 +0.6
147,178 - CSW01_14670 0.53 -0.3
147,178 - CSW01_14670 0.53 +0.9
147,220 + CSW01_14670 0.57 +1.0
147,220 - CSW01_14670 0.57 +0.1
147,225 - CSW01_14670 0.58 +0.5
147,357 + CSW01_14670 0.71 +1.1
147,474 - CSW01_14670 0.83 +0.7
147,483 + CSW01_14670 0.83 +2.7
147,491 - CSW01_14670 0.84 +1.6
147,491 - CSW01_14670 0.84 -2.2
147,491 - CSW01_14670 0.84 -0.4
147,491 - CSW01_14670 0.84 +1.3
147,553 - +0.4
147,563 - -0.6
147,599 + +0.6
147,611 + -1.6
147,619 + +0.9
147,629 - -0.3
147,629 - +0.8

Or see this region's nucleotide sequence