Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14430

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14425 and CSW01_14430 are separated by 222 nucleotidesCSW01_14430 and CSW01_14435 are separated by 89 nucleotides CSW01_14425: CSW01_14425 - GGDEF domain-containing protein, at 90,557 to 92,380 _14425 CSW01_14430: CSW01_14430 - LysR family transcriptional regulator, at 92,603 to 93,490 _14430 CSW01_14435: CSW01_14435 - MFS transporter, at 93,580 to 94,791 _14435 Position (kb) 92 93 94Strain fitness (log2 ratio) -2 -1 0 1 2at 91.633 kb on - strand, within CSW01_14425at 91.697 kb on - strand, within CSW01_14425at 91.750 kb on + strand, within CSW01_14425at 91.753 kb on - strand, within CSW01_14425at 92.145 kb on + strand, within CSW01_14425at 92.170 kb on + strand, within CSW01_14425at 92.170 kb on + strand, within CSW01_14425at 92.170 kb on + strand, within CSW01_14425at 92.170 kb on + strand, within CSW01_14425at 92.178 kb on - strand, within CSW01_14425at 92.178 kb on - strand, within CSW01_14425at 92.178 kb on - strand, within CSW01_14425at 92.178 kb on - strand, within CSW01_14425at 92.178 kb on - strand, within CSW01_14425at 92.178 kb on - strand, within CSW01_14425at 92.252 kb on + strandat 92.752 kb on + strand, within CSW01_14430at 92.752 kb on + strand, within CSW01_14430at 92.814 kb on + strand, within CSW01_14430at 92.840 kb on - strand, within CSW01_14430at 92.910 kb on + strand, within CSW01_14430at 92.910 kb on + strand, within CSW01_14430at 92.910 kb on + strand, within CSW01_14430at 92.915 kb on + strand, within CSW01_14430at 92.923 kb on - strand, within CSW01_14430at 92.923 kb on - strand, within CSW01_14430at 92.932 kb on - strand, within CSW01_14430at 93.060 kb on - strand, within CSW01_14430at 93.081 kb on - strand, within CSW01_14430at 93.138 kb on - strand, within CSW01_14430at 93.217 kb on - strand, within CSW01_14430at 93.217 kb on - strand, within CSW01_14430at 93.217 kb on - strand, within CSW01_14430at 93.649 kb on + strandat 93.730 kb on - strand, within CSW01_14435at 93.797 kb on - strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.856 kb on - strand, within CSW01_14435at 93.856 kb on - strand, within CSW01_14435at 93.856 kb on - strand, within CSW01_14435at 93.858 kb on - strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.929 kb on + strand, within CSW01_14435at 93.974 kb on + strand, within CSW01_14435at 93.974 kb on + strand, within CSW01_14435at 93.992 kb on - strand, within CSW01_14435at 94.101 kb on + strand, within CSW01_14435at 94.101 kb on + strand, within CSW01_14435at 94.101 kb on + strand, within CSW01_14435at 94.109 kb on - strand, within CSW01_14435at 94.168 kb on - strand, within CSW01_14435at 94.192 kb on + strand, within CSW01_14435at 94.200 kb on - strand, within CSW01_14435at 94.210 kb on - strand, within CSW01_14435at 94.210 kb on - strand, within CSW01_14435at 94.325 kb on - strand, within CSW01_14435at 94.395 kb on + strand, within CSW01_14435at 94.395 kb on + strand, within CSW01_14435at 94.436 kb on - strand, within CSW01_14435

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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91,633 - CSW01_14425 0.59 +0.5
91,697 - CSW01_14425 0.62 -0.5
91,750 + CSW01_14425 0.65 +0.7
91,753 - CSW01_14425 0.66 -0.3
92,145 + CSW01_14425 0.87 -1.0
92,170 + CSW01_14425 0.88 -0.5
92,170 + CSW01_14425 0.88 -0.7
92,170 + CSW01_14425 0.88 +0.5
92,170 + CSW01_14425 0.88 +0.4
92,178 - CSW01_14425 0.89 +1.2
92,178 - CSW01_14425 0.89 -0.9
92,178 - CSW01_14425 0.89 -0.8
92,178 - CSW01_14425 0.89 +0.3
92,178 - CSW01_14425 0.89 -0.2
92,178 - CSW01_14425 0.89 +0.3
92,252 + +0.4
92,752 + CSW01_14430 0.17 +0.2
92,752 + CSW01_14430 0.17 +0.3
92,814 + CSW01_14430 0.24 -0.5
92,840 - CSW01_14430 0.27 -0.4
92,910 + CSW01_14430 0.35 -0.2
92,910 + CSW01_14430 0.35 -0.3
92,910 + CSW01_14430 0.35 +0.1
92,915 + CSW01_14430 0.35 -1.8
92,923 - CSW01_14430 0.36 +0.5
92,923 - CSW01_14430 0.36 -0.5
92,932 - CSW01_14430 0.37 -0.1
93,060 - CSW01_14430 0.51 -1.6
93,081 - CSW01_14430 0.54 +0.3
93,138 - CSW01_14430 0.60 -0.4
93,217 - CSW01_14430 0.69 +1.5
93,217 - CSW01_14430 0.69 -0.3
93,217 - CSW01_14430 0.69 -0.2
93,649 + +0.2
93,730 - CSW01_14435 0.12 +0.1
93,797 - CSW01_14435 0.18 +0.3
93,848 + CSW01_14435 0.22 -0.0
93,848 + CSW01_14435 0.22 +0.0
93,848 + CSW01_14435 0.22 +0.1
93,848 + CSW01_14435 0.22 -0.2
93,848 + CSW01_14435 0.22 +0.1
93,848 + CSW01_14435 0.22 -0.2
93,848 + CSW01_14435 0.22 +0.2
93,856 - CSW01_14435 0.23 +0.1
93,856 - CSW01_14435 0.23 +1.2
93,856 - CSW01_14435 0.23 +0.3
93,858 - CSW01_14435 0.23 -0.5
93,914 + CSW01_14435 0.28 +0.6
93,914 + CSW01_14435 0.28 -0.1
93,914 + CSW01_14435 0.28 +0.0
93,914 + CSW01_14435 0.28 +0.0
93,914 + CSW01_14435 0.28 +0.2
93,914 + CSW01_14435 0.28 -0.1
93,922 - CSW01_14435 0.28 +0.5
93,922 - CSW01_14435 0.28 -2.0
93,922 - CSW01_14435 0.28 -1.0
93,922 - CSW01_14435 0.28 +0.7
93,922 - CSW01_14435 0.28 +0.4
93,929 + CSW01_14435 0.29 +0.6
93,974 + CSW01_14435 0.33 +1.2
93,974 + CSW01_14435 0.33 +0.2
93,992 - CSW01_14435 0.34 +0.2
94,101 + CSW01_14435 0.43 +0.2
94,101 + CSW01_14435 0.43 -0.2
94,101 + CSW01_14435 0.43 +0.5
94,109 - CSW01_14435 0.44 -1.8
94,168 - CSW01_14435 0.49 +0.0
94,192 + CSW01_14435 0.50 +2.1
94,200 - CSW01_14435 0.51 +1.5
94,210 - CSW01_14435 0.52 +0.2
94,210 - CSW01_14435 0.52 -0.1
94,325 - CSW01_14435 0.61 +0.1
94,395 + CSW01_14435 0.67 +0.6
94,395 + CSW01_14435 0.67 +0.4
94,436 - CSW01_14435 0.71 +0.3

Or see this region's nucleotide sequence