Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13620

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Aerobic_PHAGE INFX20MPI_ZN6A
2,895,421	+		CSW01_13615	0.24	+0.9
2,895,429	-		CSW01_13615	0.25	-0.3
2,895,450	+		CSW01_13615	0.27	+0.9
2,895,462	+		CSW01_13615	0.28	-0.5
2,895,462	+		CSW01_13615	0.28	-0.3
2,895,467	+		CSW01_13615	0.29	-1.2
2,895,470	-		CSW01_13615	0.29	+0.1
2,895,470	-		CSW01_13615	0.29	-1.0
2,895,482	+		CSW01_13615	0.30	+0.8
2,895,485	-		CSW01_13615	0.31	+0.7
2,895,514	+		CSW01_13615	0.34	+0.7
2,895,522	-		CSW01_13615	0.35	-0.4
2,895,707	+		CSW01_13615	0.54	+0.4
2,895,715	-		CSW01_13615	0.55	-0.4
2,895,769	-		CSW01_13615	0.61	+0.5
2,895,780	+		CSW01_13615	0.62	+0.7
2,895,804	-		CSW01_13615	0.65	-0.6
2,895,873	-		CSW01_13615	0.72	-0.7
2,895,873	-		CSW01_13615	0.72	+0.7
2,895,885	-		CSW01_13615	0.73	-0.6
2,895,910	+		CSW01_13615	0.76	-0.3
2,896,000	+		CSW01_13615	0.86	+0.1
2,896,005	+		CSW01_13615	0.86	-0.4
2,896,009	+		CSW01_13615	0.86	+0.6
2,896,013	-		CSW01_13615	0.87	+0.2
2,896,013	-		CSW01_13615	0.87	-0.0
2,896,017	-		CSW01_13615	0.87	+0.3
2,896,110	-				-0.4
2,896,140	-				+1.3
2,896,140	-				+0.3
2,896,175	+				+0.0
2,896,215	+				+1.2
2,896,257	+				+0.0
2,896,257	+				-0.7
2,896,259	+				+0.0
2,896,265	-				-0.3
2,896,277	-				-0.7
2,896,408	-				+0.0
2,896,426	+				+0.6
2,896,437	+				-1.3
2,896,446	+				-0.3
2,896,482	+				-1.1
2,896,482	+				-0.0
2,896,482	+				-0.5
2,896,482	+				-0.7
2,896,490	+				-0.2
2,896,524	+				+0.3
2,896,681	-		CSW01_13620	0.21	-0.4
2,896,720	+		CSW01_13620	0.23	+0.4
2,896,728	-		CSW01_13620	0.24	-0.0
2,896,757	+		CSW01_13620	0.26	-0.3
2,896,765	-		CSW01_13620	0.27	-2.2
2,896,805	-		CSW01_13620	0.29	-0.9
2,896,808	+		CSW01_13620	0.29	-1.2
2,896,846	+		CSW01_13620	0.32	+0.5
2,896,875	+		CSW01_13620	0.34	-1.0
2,896,980	+		CSW01_13620	0.41	-1.1
2,897,051	+		CSW01_13620	0.46	-0.1
2,897,054	-		CSW01_13620	0.46	-0.8
2,897,061	+		CSW01_13620	0.47	-0.8
2,897,069	-		CSW01_13620	0.47	-1.0
2,897,069	-		CSW01_13620	0.47	-0.2
2,897,069	-		CSW01_13620	0.47	-0.1
2,897,069	-		CSW01_13620	0.47	-1.1
2,897,069	-		CSW01_13620	0.47	-1.3
2,897,071	+		CSW01_13620	0.48	-1.9
2,897,071	+		CSW01_13620	0.48	-0.3
2,897,071	-		CSW01_13620	0.48	-0.9
2,897,116	+		CSW01_13620	0.51	-1.3
2,897,116	+		CSW01_13620	0.51	-0.8
2,897,116	+		CSW01_13620	0.51	+0.0
2,897,116	+		CSW01_13620	0.51	-0.1
2,897,121	+		CSW01_13620	0.51	-0.6
2,897,121	+		CSW01_13620	0.51	-0.4
2,897,124	-		CSW01_13620	0.51	+0.5
2,897,124	-		CSW01_13620	0.51	-0.4
2,897,124	-		CSW01_13620	0.51	+0.1
2,897,124	-		CSW01_13620	0.51	-2.0
2,897,129	-		CSW01_13620	0.52	-0.4
2,897,129	-		CSW01_13620	0.52	-1.0
2,897,129	-		CSW01_13620	0.52	-0.9
2,897,151	-		CSW01_13620	0.53	-0.3
2,897,174	+		CSW01_13620	0.55	-0.5
2,897,221	+		CSW01_13620	0.58	-0.2
2,897,221	+		CSW01_13620	0.58	-0.2
2,897,221	+		CSW01_13620	0.58	+0.5
2,897,309	+		CSW01_13620	0.64	-0.4
2,897,309	+		CSW01_13620	0.64	-0.3
2,897,312	-		CSW01_13620	0.64	-1.2
2,897,317	-		CSW01_13620	0.65	-2.2
2,897,317	-		CSW01_13620	0.65	-0.0
2,897,322	-		CSW01_13620	0.65	-0.1
2,897,322	-		CSW01_13620	0.65	-0.4
2,897,322	-		CSW01_13620	0.65	+1.0
2,897,322	-		CSW01_13620	0.65	-0.9
2,897,322	-		CSW01_13620	0.65	-0.3
2,897,322	-		CSW01_13620	0.65	-0.2
2,897,326	+		CSW01_13620	0.65	+0.0
2,897,331	+		CSW01_13620	0.65	+0.5
2,897,339	-		CSW01_13620	0.66	-1.5
2,897,358	-		CSW01_13620	0.67	-0.1
2,897,444	-		CSW01_13620	0.73	-0.1
2,897,455	+		CSW01_13620	0.74	-1.9
2,897,455	+		CSW01_13620	0.74	-1.0
2,897,463	-		CSW01_13620	0.75	+0.4
2,897,486	-		CSW01_13620	0.76	+0.1
2,897,539	-		CSW01_13620	0.80	-0.9
2,897,546	+		CSW01_13620	0.80	-0.1
2,897,557	+		CSW01_13620	0.81	-1.2
2,897,565	-		CSW01_13620	0.82	+0.2
2,897,565	-		CSW01_13620	0.82	-0.3
2,897,565	-		CSW01_13620	0.82	-0.4
2,897,565	-		CSW01_13620	0.82	-0.4
2,897,632	-		CSW01_13620	0.86	-0.1
2,897,657	+		CSW01_13620	0.88	-1.7
2,897,665	-		CSW01_13620	0.88	+0.5
2,897,672	+		CSW01_13620	0.89	-1.1
2,897,678	+		CSW01_13620	0.89	-0.9
2,897,680	-		CSW01_13620	0.90	+0.7
2,897,686	-				-0.6
2,897,696	+				-2.5
2,897,728	+				+0.3
2,897,736	-				+0.5
2,897,755	+				-0.2
2,897,763	-				-0.4
2,897,773	-				+0.1
2,897,792	-				-1.5
2,897,847	-				+0.2
2,897,867	-				+0.4
2,897,986	-				+0.4
2,897,997	+				-0.3
2,898,057	-				+0.5
2,898,065	+				-0.4
2,898,065	+				-0.1
2,898,073	-				-0.1
2,898,096	-		CSW01_13625	0.10	-1.9
2,898,103	-		CSW01_13625	0.11	-0.3
2,898,228	-		CSW01_13625	0.21	-0.4
2,898,275	+		CSW01_13625	0.24	-0.5
2,898,275	+		CSW01_13625	0.24	+0.8
2,898,275	+		CSW01_13625	0.24	-0.8
2,898,275	+		CSW01_13625	0.24	+0.3
2,898,275	+		CSW01_13625	0.24	+1.0
2,898,275	+		CSW01_13625	0.24	+0.7
2,898,283	-		CSW01_13625	0.25	-1.0
2,898,283	-		CSW01_13625	0.25	+0.4
2,898,283	-		CSW01_13625	0.25	+0.1
2,898,334	+		CSW01_13625	0.29	-0.0
2,898,357	+		CSW01_13625	0.30	-0.3
2,898,456	-		CSW01_13625	0.38	-0.2
2,898,458	+		CSW01_13625	0.38	-0.5
2,898,458	+		CSW01_13625	0.38	-1.6
2,898,458	+		CSW01_13625	0.38	-1.3
2,898,458	+		CSW01_13625	0.38	+1.0
2,898,458	+		CSW01_13625	0.38	-0.5
2,898,458	+		CSW01_13625	0.38	-0.6
2,898,466	-		CSW01_13625	0.39	-0.9
2,898,466	-		CSW01_13625	0.39	-1.0
2,898,466	-		CSW01_13625	0.39	-1.3
2,898,466	-		CSW01_13625	0.39	-0.7
2,898,466	-		CSW01_13625	0.39	+2.1
2,898,466	-		CSW01_13625	0.39	+0.3
2,898,466	-		CSW01_13625	0.39	+1.7
2,898,466	-		CSW01_13625	0.39	+0.6
2,898,466	-		CSW01_13625	0.39	-0.6
2,898,492	-		CSW01_13625	0.41	-0.3
2,898,527	+		CSW01_13625	0.43	+0.1
2,898,527	+		CSW01_13625	0.43	+1.0
2,898,704	+		CSW01_13625	0.57	-0.4
2,898,762	-		CSW01_13625	0.61	+0.8
2,898,787	-		CSW01_13625	0.63	-0.7
2,898,787	-		CSW01_13625	0.63	-0.8
2,898,787	-		CSW01_13625	0.63	+0.1
2,898,798	+		CSW01_13625	0.64	+0.3
2,898,798	+		CSW01_13625	0.64	+0.4
2,898,806	-		CSW01_13625	0.65	-0.2
2,898,806	-		CSW01_13625	0.65	-0.2
2,898,806	-		CSW01_13625	0.65	-0.2