Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13550

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Aerobic_PHAGE INFX20MPI_ZN6A
2,880,790	+		CSW01_13540	0.81	-0.4
2,880,810	-		CSW01_13540	0.82	-0.9
2,880,889	+		CSW01_13540	0.88	+0.1
2,880,920	+				-0.4
2,880,994	-				-0.2
2,881,029	+				+0.2
2,881,037	-				+0.6
2,881,037	-				-0.2
2,881,123	+				+0.1
2,881,432	+				+2.6
2,881,478	-				-0.4
2,881,618	+				-0.5
2,881,668	+				+2.3
2,881,668	+				-1.3
2,881,671	-				+0.3
2,881,676	-				+0.0
2,881,692	-				+0.3
2,881,699	+				+0.3
2,881,699	+				-0.5
2,881,699	+				+0.3
2,881,699	+				-0.5
2,881,707	-				+0.5
2,881,707	-				-0.4
2,881,709	+				+0.3
2,881,721	+				-0.7
2,881,727	+				+0.9
2,881,735	-				+0.3
2,881,736	-				-1.2
2,881,794	-				+1.8
2,881,818	-				+0.1
2,881,883	-		CSW01_13550	0.13	+0.2
2,881,893	-		CSW01_13550	0.14	-0.3
2,881,912	+		CSW01_13550	0.16	+0.2
2,881,912	+		CSW01_13550	0.16	-0.2
2,881,920	-		CSW01_13550	0.16	+0.9
2,881,920	-		CSW01_13550	0.16	-0.4
2,881,920	-		CSW01_13550	0.16	+0.5
2,881,963	-		CSW01_13550	0.20	+1.0
2,882,030	-		CSW01_13550	0.26	+0.3
2,882,054	+		CSW01_13550	0.28	+0.8
2,882,105	+		CSW01_13550	0.32	-0.4
2,882,121	-		CSW01_13550	0.33	+0.8
2,882,126	-		CSW01_13550	0.34	+0.3
2,882,143	+		CSW01_13550	0.35	-0.1
2,882,151	-		CSW01_13550	0.36	+0.3
2,882,152	-		CSW01_13550	0.36	-0.5
2,882,152	-		CSW01_13550	0.36	+0.1
2,882,177	-		CSW01_13550	0.38	+0.4
2,882,186	-		CSW01_13550	0.39	-0.4
2,882,226	+		CSW01_13550	0.42	-0.3
2,882,234	-		CSW01_13550	0.43	+0.8
2,882,234	-		CSW01_13550	0.43	-0.2
2,882,249	+		CSW01_13550	0.44	+0.4
2,882,257	-		CSW01_13550	0.45	+0.0
2,882,291	-		CSW01_13550	0.48	+0.9
2,882,298	-		CSW01_13550	0.49	+0.1
2,882,298	-		CSW01_13550	0.49	+0.5
2,882,307	+		CSW01_13550	0.49	+0.4
2,882,351	+		CSW01_13550	0.53	-0.3
2,882,409	+		CSW01_13550	0.58	+0.3
2,882,416	+		CSW01_13550	0.59	+0.3
2,882,424	-		CSW01_13550	0.59	-0.2
2,882,424	-		CSW01_13550	0.59	-0.4
2,882,424	-		CSW01_13550	0.59	+0.8
2,882,424	-		CSW01_13550	0.59	+0.8
2,882,434	-		CSW01_13550	0.60	+0.3
2,882,436	+		CSW01_13550	0.60	-0.1
2,882,455	-		CSW01_13550	0.62	-0.2
2,882,455	-		CSW01_13550	0.62	+1.8
2,882,496	+		CSW01_13550	0.66	+0.1
2,882,516	+		CSW01_13550	0.67	-0.2
2,882,571	-		CSW01_13550	0.72	-0.3
2,882,636	-		CSW01_13550	0.78	+0.4
2,882,653	+		CSW01_13550	0.79	+0.2
2,882,653	+		CSW01_13550	0.79	+0.2
2,882,661	-		CSW01_13550	0.80	+0.7
2,882,693	+		CSW01_13550	0.82	+0.3
2,882,710	-		CSW01_13550	0.84	-0.4
2,882,747	+		CSW01_13550	0.87	+0.1
2,882,785	-				-0.9
2,882,785	-				+0.0
2,882,786	-				+0.2
2,882,827	+				-0.4
2,882,835	-				-1.2
2,882,835	-				+0.3
2,882,835	-				+0.7
2,882,835	-				-0.2
2,882,839	+				+0.3
2,882,839	+				-0.1
2,882,899	-				+0.2
2,882,935	+				-1.2
2,883,080	+				+0.3
2,883,080	+				-0.9
2,883,083	-				+0.5
2,883,088	-				+0.1
2,883,183	-		CSW01_13555	0.11	-0.2
2,883,221	+		CSW01_13555	0.13	-1.0
2,883,270	+		CSW01_13555	0.15	+0.7
2,883,275	+		CSW01_13555	0.15	+0.3
2,883,280	+		CSW01_13555	0.15	-0.1
2,883,283	-		CSW01_13555	0.15	+0.3
2,883,283	-		CSW01_13555	0.15	+0.4
2,883,288	+		CSW01_13555	0.16	-1.2
2,883,342	-		CSW01_13555	0.18	+0.4
2,883,377	+		CSW01_13555	0.19	+0.5
2,883,377	+		CSW01_13555	0.19	-0.5
2,883,385	-		CSW01_13555	0.20	-0.3
2,883,398	+		CSW01_13555	0.20	+0.6
2,883,406	-		CSW01_13555	0.21	+0.3
2,883,406	-		CSW01_13555	0.21	+0.3
2,883,406	-		CSW01_13555	0.21	-0.2
2,883,406	-		CSW01_13555	0.21	+0.3
2,883,410	+		CSW01_13555	0.21	-0.9
2,883,410	+		CSW01_13555	0.21	-0.2
2,883,410	+		CSW01_13555	0.21	-0.3
2,883,410	+		CSW01_13555	0.21	+0.4
2,883,418	-		CSW01_13555	0.21	-0.0
2,883,431	+		CSW01_13555	0.22	-0.4
2,883,438	-		CSW01_13555	0.22	-0.1
2,883,443	-		CSW01_13555	0.22	-0.2
2,883,445	+		CSW01_13555	0.22	+0.4
2,883,450	+		CSW01_13555	0.22	+1.1
2,883,482	+		CSW01_13555	0.24	+0.3
2,883,482	+		CSW01_13555	0.24	-1.2
2,883,487	+		CSW01_13555	0.24	+0.2
2,883,487	+		CSW01_13555	0.24	-0.0
2,883,487	+		CSW01_13555	0.24	+0.3
2,883,490	-		CSW01_13555	0.24	+0.3
2,883,490	-		CSW01_13555	0.24	-0.2
2,883,490	-		CSW01_13555	0.24	-0.4
2,883,495	-		CSW01_13555	0.24	+0.3
2,883,495	-		CSW01_13555	0.24	+0.1
2,883,495	-		CSW01_13555	0.24	-1.1
2,883,528	+		CSW01_13555	0.26	+1.4
2,883,545	+		CSW01_13555	0.26	-1.4
2,883,585	+		CSW01_13555	0.28	+0.4
2,883,585	+		CSW01_13555	0.28	+0.8
2,883,590	+		CSW01_13555	0.28	-0.1
2,883,590	+		CSW01_13555	0.28	-0.2
2,883,590	+		CSW01_13555	0.28	-0.1
2,883,593	-		CSW01_13555	0.28	-0.1
2,883,593	-		CSW01_13555	0.28	-0.1
2,883,593	-		CSW01_13555	0.28	-1.5
2,883,593	-		CSW01_13555	0.28	-0.2
2,883,593	-		CSW01_13555	0.28	+0.4
2,883,593	-		CSW01_13555	0.28	-0.2
2,883,593	-		CSW01_13555	0.28	-0.3
2,883,595	+		CSW01_13555	0.28	+0.6
2,883,595	-		CSW01_13555	0.28	-0.1
2,883,598	-		CSW01_13555	0.29	+0.3
2,883,646	-		CSW01_13555	0.31	+1.3
2,883,652	+		CSW01_13555	0.31	-0.0
2,883,684	+		CSW01_13555	0.32	+0.3
2,883,684	+		CSW01_13555	0.32	+1.5
2,883,687	-		CSW01_13555	0.32	+0.1
2,883,694	+		CSW01_13555	0.33	-0.0
2,883,694	+		CSW01_13555	0.33	+0.3
2,883,694	+		CSW01_13555	0.33	-0.7
2,883,694	+		CSW01_13555	0.33	+0.3
2,883,694	+		CSW01_13555	0.33	+0.4
2,883,694	+		CSW01_13555	0.33	+0.3
2,883,694	+		CSW01_13555	0.33	+0.9
2,883,694	+		CSW01_13555	0.33	+0.8
2,883,701	+		CSW01_13555	0.33	-0.1
2,883,701	+		CSW01_13555	0.33	+0.9
2,883,702	-		CSW01_13555	0.33	-0.3
2,883,702	-		CSW01_13555	0.33	+2.6
2,883,702	-		CSW01_13555	0.33	-1.6
2,883,702	-		CSW01_13555	0.33	-0.4
2,883,702	-		CSW01_13555	0.33	+0.3
2,883,702	-		CSW01_13555	0.33	-1.9
2,883,702	-		CSW01_13555	0.33	-0.4
2,883,702	-		CSW01_13555	0.33	+0.4
2,883,702	-		CSW01_13555	0.33	-0.1
2,883,702	-		CSW01_13555	0.33	+0.3
2,883,702	-		CSW01_13555	0.33	+0.4
2,883,711	+		CSW01_13555	0.33	+0.0
2,883,719	+		CSW01_13555	0.34	+0.4
2,883,721	+		CSW01_13555	0.34	+1.0
2,883,724	+		CSW01_13555	0.34	+0.4
2,883,732	-		CSW01_13555	0.34	+1.8
2,883,824	+		CSW01_13555	0.38	-0.4
2,883,853	+		CSW01_13555	0.39	-1.2
2,883,854	-		CSW01_13555	0.39	+0.7