Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09615

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09610 and CSW01_09615 are separated by 79 nucleotidesCSW01_09615 and CSW01_09620 are separated by 105 nucleotides CSW01_09610: CSW01_09610 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,070,613 to 2,071,893 _09610 CSW01_09615: CSW01_09615 - ATP-dependent Clp endopeptidase, proteolytic subunit ClpP, at 2,071,973 to 2,072,599 _09615 CSW01_09620: CSW01_09620 - trigger factor, at 2,072,705 to 2,074,006 _09620 Position (kb) 2071 2072 2073Strain fitness (log2 ratio) -1 0 1at 2072.894 kb on + strand, within CSW01_09620at 2072.946 kb on + strand, within CSW01_09620at 2073.016 kb on - strand, within CSW01_09620at 2073.091 kb on + strand, within CSW01_09620at 2073.232 kb on - strand, within CSW01_09620

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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2,072,894 + CSW01_09620 0.15 +0.2
2,072,946 + CSW01_09620 0.19 -1.3
2,073,016 - CSW01_09620 0.24 -0.5
2,073,091 + CSW01_09620 0.30 -1.6
2,073,232 - CSW01_09620 0.40 -1.2

Or see this region's nucleotide sequence