Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05720

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05715 and CSW01_05720 are separated by 57 nucleotidesCSW01_05720 and CSW01_05725 are separated by 22 nucleotides CSW01_05715: CSW01_05715 - adenylosuccinate lyase, at 1,192,109 to 1,193,479 _05715 CSW01_05720: CSW01_05720 - lysogenization protein HflD, at 1,193,537 to 1,194,154 _05720 CSW01_05725: CSW01_05725 - tRNA 2-thiouridine(34) synthase MnmA, at 1,194,177 to 1,195,295 _05725 Position (kb) 1193 1194 1195Strain fitness (log2 ratio) -1 0 1at 1193.895 kb on - strand, within CSW01_05720at 1193.895 kb on - strand, within CSW01_05720

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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1,193,895 - CSW01_05720 0.58 -0.5
1,193,895 - CSW01_05720 0.58 +1.1

Or see this region's nucleotide sequence