Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05680

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05670 and CSW01_05675 are separated by 209 nucleotidesCSW01_05675 and CSW01_05680 overlap by 4 nucleotidesCSW01_05680 and CSW01_05685 are separated by 10 nucleotides CSW01_05670: CSW01_05670 - protease HtpX, at 1,184,899 to 1,185,762 _05670 CSW01_05675: CSW01_05675 - nuclear transport factor 2 family protein, at 1,185,972 to 1,186,400 _05675 CSW01_05680: CSW01_05680 - short-chain dehydrogenase, at 1,186,397 to 1,187,122 _05680 CSW01_05685: CSW01_05685 - FAD-dependent oxidoreductase, at 1,187,133 to 1,188,413 _05685 Position (kb) 1186 1187 1188Strain fitness (log2 ratio) -2 -1 0 1 2at 1185.454 kb on + strand, within CSW01_05670at 1185.600 kb on + strand, within CSW01_05670at 1185.616 kb on + strand, within CSW01_05670at 1185.693 kb on - strandat 1185.740 kb on + strandat 1185.791 kb on - strandat 1185.795 kb on - strandat 1186.060 kb on - strand, within CSW01_05675at 1186.100 kb on + strand, within CSW01_05675at 1186.143 kb on + strand, within CSW01_05675at 1186.202 kb on + strand, within CSW01_05675at 1186.202 kb on + strand, within CSW01_05675at 1186.241 kb on + strand, within CSW01_05675at 1186.263 kb on + strand, within CSW01_05675at 1186.274 kb on + strand, within CSW01_05675at 1186.408 kb on + strandat 1186.453 kb on + strandat 1186.468 kb on + strandat 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.597 kb on + strand, within CSW01_05680at 1186.597 kb on + strand, within CSW01_05680at 1186.608 kb on + strand, within CSW01_05680at 1186.678 kb on + strand, within CSW01_05680at 1186.680 kb on + strand, within CSW01_05680at 1186.723 kb on + strand, within CSW01_05680at 1186.742 kb on + strand, within CSW01_05680at 1186.750 kb on - strand, within CSW01_05680at 1186.790 kb on + strand, within CSW01_05680at 1186.790 kb on + strand, within CSW01_05680at 1186.797 kb on - strand, within CSW01_05680at 1186.814 kb on + strand, within CSW01_05680at 1186.822 kb on - strand, within CSW01_05680at 1186.867 kb on - strand, within CSW01_05680at 1186.968 kb on + strand, within CSW01_05680at 1186.973 kb on - strand, within CSW01_05680at 1186.998 kb on - strand, within CSW01_05680at 1187.013 kb on + strand, within CSW01_05680at 1187.013 kb on + strand, within CSW01_05680at 1187.077 kb on - strandat 1187.169 kb on + strandat 1187.177 kb on - strandat 1187.214 kb on - strandat 1187.238 kb on + strandat 1187.287 kb on - strand, within CSW01_05685at 1187.353 kb on + strand, within CSW01_05685at 1187.374 kb on - strand, within CSW01_05685at 1187.386 kb on + strand, within CSW01_05685at 1187.396 kb on + strand, within CSW01_05685at 1187.436 kb on - strand, within CSW01_05685at 1187.510 kb on - strand, within CSW01_05685at 1187.624 kb on + strand, within CSW01_05685at 1187.632 kb on - strand, within CSW01_05685at 1187.715 kb on - strand, within CSW01_05685at 1187.770 kb on + strand, within CSW01_05685at 1187.819 kb on - strand, within CSW01_05685at 1187.854 kb on + strand, within CSW01_05685at 1187.854 kb on + strand, within CSW01_05685at 1187.855 kb on + strand, within CSW01_05685at 1187.862 kb on - strand, within CSW01_05685at 1187.862 kb on - strand, within CSW01_05685at 1187.936 kb on + strand, within CSW01_05685at 1187.998 kb on + strand, within CSW01_05685at 1188.008 kb on - strand, within CSW01_05685at 1188.052 kb on - strand, within CSW01_05685at 1188.076 kb on - strand, within CSW01_05685at 1188.106 kb on + strand, within CSW01_05685

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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1,185,454 + CSW01_05670 0.64 +0.5
1,185,600 + CSW01_05670 0.81 -0.5
1,185,616 + CSW01_05670 0.83 +2.1
1,185,693 - -0.7
1,185,740 + +1.2
1,185,791 - -1.2
1,185,795 - -0.3
1,186,060 - CSW01_05675 0.21 -0.8
1,186,100 + CSW01_05675 0.30 +0.4
1,186,143 + CSW01_05675 0.40 +0.4
1,186,202 + CSW01_05675 0.54 +0.5
1,186,202 + CSW01_05675 0.54 +0.0
1,186,241 + CSW01_05675 0.63 +0.0
1,186,263 + CSW01_05675 0.68 +0.9
1,186,274 + CSW01_05675 0.70 +1.2
1,186,408 + +0.7
1,186,453 + -0.1
1,186,468 + -1.5
1,186,505 + CSW01_05680 0.15 +1.0
1,186,505 + CSW01_05680 0.15 -1.2
1,186,505 + CSW01_05680 0.15 -0.9
1,186,505 + CSW01_05680 0.15 -1.2
1,186,505 + CSW01_05680 0.15 +0.2
1,186,505 + CSW01_05680 0.15 -0.2
1,186,505 + CSW01_05680 0.15 -0.1
1,186,505 + CSW01_05680 0.15 -0.6
1,186,505 + CSW01_05680 0.15 +1.9
1,186,505 + CSW01_05680 0.15 -0.4
1,186,505 + CSW01_05680 0.15 +0.6
1,186,505 + CSW01_05680 0.15 -0.6
1,186,505 + CSW01_05680 0.15 -0.2
1,186,505 + CSW01_05680 0.15 -0.1
1,186,505 + CSW01_05680 0.15 -0.5
1,186,513 - CSW01_05680 0.16 +1.0
1,186,513 - CSW01_05680 0.16 +1.3
1,186,513 - CSW01_05680 0.16 -1.3
1,186,513 - CSW01_05680 0.16 +0.7
1,186,513 - CSW01_05680 0.16 -0.3
1,186,513 - CSW01_05680 0.16 -0.5
1,186,513 - CSW01_05680 0.16 -0.6
1,186,513 - CSW01_05680 0.16 +1.4
1,186,513 - CSW01_05680 0.16 +0.2
1,186,513 - CSW01_05680 0.16 -1.5
1,186,597 + CSW01_05680 0.28 -1.5
1,186,597 + CSW01_05680 0.28 +0.6
1,186,608 + CSW01_05680 0.29 +0.4
1,186,678 + CSW01_05680 0.39 +0.3
1,186,680 + CSW01_05680 0.39 -0.3
1,186,723 + CSW01_05680 0.45 -0.9
1,186,742 + CSW01_05680 0.48 -0.1
1,186,750 - CSW01_05680 0.49 -0.3
1,186,790 + CSW01_05680 0.54 +0.3
1,186,790 + CSW01_05680 0.54 +0.4
1,186,797 - CSW01_05680 0.55 -1.0
1,186,814 + CSW01_05680 0.57 -2.1
1,186,822 - CSW01_05680 0.59 -0.1
1,186,867 - CSW01_05680 0.65 -1.2
1,186,968 + CSW01_05680 0.79 +0.0
1,186,973 - CSW01_05680 0.79 +0.1
1,186,998 - CSW01_05680 0.83 +1.9
1,187,013 + CSW01_05680 0.85 +0.6
1,187,013 + CSW01_05680 0.85 +0.7
1,187,077 - +0.4
1,187,169 + -1.2
1,187,177 - +0.0
1,187,214 - -0.3
1,187,238 + +0.1
1,187,287 - CSW01_05685 0.12 -2.6
1,187,353 + CSW01_05685 0.17 -0.9
1,187,374 - CSW01_05685 0.19 -0.0
1,187,386 + CSW01_05685 0.20 -1.4
1,187,396 + CSW01_05685 0.21 +0.5
1,187,436 - CSW01_05685 0.24 +0.5
1,187,510 - CSW01_05685 0.29 -1.3
1,187,624 + CSW01_05685 0.38 -0.9
1,187,632 - CSW01_05685 0.39 -0.1
1,187,715 - CSW01_05685 0.45 +0.0
1,187,770 + CSW01_05685 0.50 +0.4
1,187,819 - CSW01_05685 0.54 -0.3
1,187,854 + CSW01_05685 0.56 -0.2
1,187,854 + CSW01_05685 0.56 +0.1
1,187,855 + CSW01_05685 0.56 +0.2
1,187,862 - CSW01_05685 0.57 +0.3
1,187,862 - CSW01_05685 0.57 -0.8
1,187,936 + CSW01_05685 0.63 +1.7
1,187,998 + CSW01_05685 0.68 -0.5
1,188,008 - CSW01_05685 0.68 +0.2
1,188,052 - CSW01_05685 0.72 -0.1
1,188,076 - CSW01_05685 0.74 +0.5
1,188,106 + CSW01_05685 0.76 -0.1

Or see this region's nucleotide sequence