Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04630

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04620 and CSW01_04625 are separated by 48 nucleotidesCSW01_04625 and CSW01_04630 are separated by 1 nucleotidesCSW01_04630 and CSW01_04635 are separated by 132 nucleotidesCSW01_04635 and CSW01_04640 are separated by 36 nucleotides CSW01_04620: CSW01_04620 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 961,531 to 962,376 _04620 CSW01_04625: CSW01_04625 - SecY-interacting protein, at 962,425 to 963,021 _04625 CSW01_04630: CSW01_04630 - hypothetical protein, at 963,023 to 963,799 _04630 CSW01_04635: CSW01_04635 - methionine ABC transporter substrate-binding protein MetQ, at 963,932 to 964,741 _04635 CSW01_04640: CSW01_04640 - methionine ABC transporter permease, at 964,778 to 965,455 _04640 Position (kb) 963 964Strain fitness (log2 ratio) -2 -1 0 1 2 3at 962.026 kb on + strand, within CSW01_04620at 962.034 kb on - strand, within CSW01_04620at 962.041 kb on + strand, within CSW01_04620at 962.084 kb on - strand, within CSW01_04620at 962.104 kb on - strand, within CSW01_04620at 962.186 kb on + strand, within CSW01_04620at 962.186 kb on + strand, within CSW01_04620at 962.194 kb on - strand, within CSW01_04620at 962.194 kb on - strand, within CSW01_04620at 962.205 kb on - strand, within CSW01_04620at 962.256 kb on - strand, within CSW01_04620at 962.272 kb on + strand, within CSW01_04620at 962.291 kb on - strand, within CSW01_04620at 962.310 kb on - strandat 962.334 kb on + strandat 962.334 kb on + strandat 962.334 kb on + strandat 962.334 kb on + strandat 962.342 kb on - strandat 962.342 kb on - strandat 962.342 kb on - strandat 962.349 kb on + strandat 962.442 kb on - strandat 962.488 kb on + strand, within CSW01_04625at 962.494 kb on + strand, within CSW01_04625at 962.496 kb on - strand, within CSW01_04625at 962.580 kb on + strand, within CSW01_04625at 962.709 kb on + strand, within CSW01_04625at 962.731 kb on + strand, within CSW01_04625at 962.732 kb on - strand, within CSW01_04625at 962.741 kb on - strand, within CSW01_04625at 962.741 kb on - strand, within CSW01_04625at 962.741 kb on - strand, within CSW01_04625at 962.751 kb on - strand, within CSW01_04625at 962.786 kb on - strand, within CSW01_04625at 962.832 kb on + strand, within CSW01_04625at 962.836 kb on + strand, within CSW01_04625at 962.854 kb on - strand, within CSW01_04625at 962.876 kb on + strand, within CSW01_04625at 962.941 kb on + strand, within CSW01_04625at 962.943 kb on + strand, within CSW01_04625at 962.973 kb on - strandat 963.062 kb on + strandat 963.087 kb on - strandat 963.095 kb on + strandat 963.136 kb on - strand, within CSW01_04630at 963.136 kb on - strand, within CSW01_04630at 963.136 kb on - strand, within CSW01_04630at 963.136 kb on - strand, within CSW01_04630at 963.160 kb on - strand, within CSW01_04630at 963.242 kb on + strand, within CSW01_04630at 963.252 kb on + strand, within CSW01_04630at 963.304 kb on + strand, within CSW01_04630at 963.309 kb on + strand, within CSW01_04630at 963.317 kb on - strand, within CSW01_04630at 963.317 kb on - strand, within CSW01_04630at 963.360 kb on + strand, within CSW01_04630at 963.368 kb on + strand, within CSW01_04630at 963.376 kb on + strand, within CSW01_04630at 963.376 kb on - strand, within CSW01_04630at 963.378 kb on - strand, within CSW01_04630at 963.383 kb on + strand, within CSW01_04630at 963.391 kb on - strand, within CSW01_04630at 963.446 kb on - strand, within CSW01_04630at 963.459 kb on - strand, within CSW01_04630at 963.517 kb on + strand, within CSW01_04630at 963.524 kb on + strand, within CSW01_04630at 963.525 kb on - strand, within CSW01_04630at 963.530 kb on - strand, within CSW01_04630at 963.574 kb on - strand, within CSW01_04630at 963.619 kb on + strand, within CSW01_04630at 963.663 kb on - strand, within CSW01_04630at 963.682 kb on + strand, within CSW01_04630at 963.682 kb on + strand, within CSW01_04630at 963.682 kb on + strand, within CSW01_04630at 963.701 kb on + strand, within CSW01_04630at 963.725 kb on + strandat 963.755 kb on - strandat 963.874 kb on + strandat 963.962 kb on - strandat 963.983 kb on - strandat 964.036 kb on + strand, within CSW01_04635at 964.125 kb on - strand, within CSW01_04635at 964.148 kb on - strand, within CSW01_04635at 964.164 kb on - strand, within CSW01_04635at 964.186 kb on + strand, within CSW01_04635at 964.253 kb on - strand, within CSW01_04635at 964.298 kb on + strand, within CSW01_04635at 964.321 kb on - strand, within CSW01_04635at 964.384 kb on + strand, within CSW01_04635at 964.384 kb on + strand, within CSW01_04635at 964.392 kb on - strand, within CSW01_04635at 964.392 kb on - strand, within CSW01_04635at 964.392 kb on - strand, within CSW01_04635at 964.392 kb on - strand, within CSW01_04635at 964.478 kb on + strand, within CSW01_04635at 964.519 kb on - strand, within CSW01_04635at 964.657 kb on - strand, within CSW01_04635at 964.657 kb on - strand, within CSW01_04635at 964.729 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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962,026 + CSW01_04620 0.59 +0.3
962,034 - CSW01_04620 0.59 -0.1
962,041 + CSW01_04620 0.60 +0.8
962,084 - CSW01_04620 0.65 +1.3
962,104 - CSW01_04620 0.68 +3.1
962,186 + CSW01_04620 0.77 -1.3
962,186 + CSW01_04620 0.77 +0.7
962,194 - CSW01_04620 0.78 +0.6
962,194 - CSW01_04620 0.78 -1.2
962,205 - CSW01_04620 0.80 +0.1
962,256 - CSW01_04620 0.86 -0.4
962,272 + CSW01_04620 0.88 -0.4
962,291 - CSW01_04620 0.90 +1.6
962,310 - -0.1
962,334 + +2.0
962,334 + +0.8
962,334 + +0.7
962,334 + +0.9
962,342 - +0.3
962,342 - +0.7
962,342 - +0.9
962,349 + +1.2
962,442 - +0.9
962,488 + CSW01_04625 0.11 -0.4
962,494 + CSW01_04625 0.12 +3.0
962,496 - CSW01_04625 0.12 -0.7
962,580 + CSW01_04625 0.26 +0.2
962,709 + CSW01_04625 0.48 +0.1
962,731 + CSW01_04625 0.51 -0.2
962,732 - CSW01_04625 0.51 -0.5
962,741 - CSW01_04625 0.53 -1.3
962,741 - CSW01_04625 0.53 +0.4
962,741 - CSW01_04625 0.53 +0.5
962,751 - CSW01_04625 0.55 +0.4
962,786 - CSW01_04625 0.60 +0.1
962,832 + CSW01_04625 0.68 +0.3
962,836 + CSW01_04625 0.69 -1.2
962,854 - CSW01_04625 0.72 -0.8
962,876 + CSW01_04625 0.76 +0.7
962,941 + CSW01_04625 0.86 -0.1
962,943 + CSW01_04625 0.87 +0.5
962,973 - -0.2
963,062 + +1.4
963,087 - -0.1
963,095 + +0.3
963,136 - CSW01_04630 0.15 -0.2
963,136 - CSW01_04630 0.15 +1.3
963,136 - CSW01_04630 0.15 +0.3
963,136 - CSW01_04630 0.15 +0.6
963,160 - CSW01_04630 0.18 -0.6
963,242 + CSW01_04630 0.28 +0.2
963,252 + CSW01_04630 0.29 -0.0
963,304 + CSW01_04630 0.36 +0.5
963,309 + CSW01_04630 0.37 -0.9
963,317 - CSW01_04630 0.38 -0.2
963,317 - CSW01_04630 0.38 +1.4
963,360 + CSW01_04630 0.43 +0.1
963,368 + CSW01_04630 0.44 +1.5
963,376 + CSW01_04630 0.45 -2.2
963,376 - CSW01_04630 0.45 +1.1
963,378 - CSW01_04630 0.46 -0.4
963,383 + CSW01_04630 0.46 +2.6
963,391 - CSW01_04630 0.47 +0.3
963,446 - CSW01_04630 0.54 +0.4
963,459 - CSW01_04630 0.56 -1.4
963,517 + CSW01_04630 0.64 -0.3
963,524 + CSW01_04630 0.64 +0.2
963,525 - CSW01_04630 0.65 +0.3
963,530 - CSW01_04630 0.65 +0.1
963,574 - CSW01_04630 0.71 +0.0
963,619 + CSW01_04630 0.77 -0.1
963,663 - CSW01_04630 0.82 -0.7
963,682 + CSW01_04630 0.85 +0.2
963,682 + CSW01_04630 0.85 +0.9
963,682 + CSW01_04630 0.85 +2.0
963,701 + CSW01_04630 0.87 -0.6
963,725 + -0.5
963,755 - +0.4
963,874 + -0.1
963,962 - -0.1
963,983 - +0.1
964,036 + CSW01_04635 0.13 +0.1
964,125 - CSW01_04635 0.24 +2.3
964,148 - CSW01_04635 0.27 -0.2
964,164 - CSW01_04635 0.29 +0.5
964,186 + CSW01_04635 0.31 -0.0
964,253 - CSW01_04635 0.40 -0.6
964,298 + CSW01_04635 0.45 -1.1
964,321 - CSW01_04635 0.48 -2.0
964,384 + CSW01_04635 0.56 +0.1
964,384 + CSW01_04635 0.56 +0.2
964,392 - CSW01_04635 0.57 -0.7
964,392 - CSW01_04635 0.57 -0.2
964,392 - CSW01_04635 0.57 -0.1
964,392 - CSW01_04635 0.57 -0.7
964,478 + CSW01_04635 0.67 +0.3
964,519 - CSW01_04635 0.72 +0.2
964,657 - CSW01_04635 0.90 +0.2
964,657 - CSW01_04635 0.90 +0.6
964,729 + -1.3

Or see this region's nucleotide sequence