Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04320

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04315 and CSW01_04320 overlap by 1 nucleotidesCSW01_04320 and CSW01_04325 are separated by 6 nucleotides CSW01_04315: CSW01_04315 - TCP pilus virulence regulatory protein, at 898,635 to 899,465 _04315 CSW01_04320: CSW01_04320 - type 4 prepilin-like proteins leader peptide-processing enzyme, at 899,465 to 900,226 _04320 CSW01_04325: CSW01_04325 - methyl-accepting chemotaxis protein, at 900,233 to 902,113 _04325 Position (kb) 899 900 901Strain fitness (log2 ratio) -2 -1 0 1 2at 898.533 kb on + strandat 898.553 kb on - strandat 898.561 kb on - strandat 898.581 kb on + strandat 898.598 kb on - strandat 898.618 kb on + strandat 898.901 kb on + strand, within CSW01_04315at 898.909 kb on - strand, within CSW01_04315at 899.005 kb on + strand, within CSW01_04315at 899.200 kb on - strand, within CSW01_04315at 899.202 kb on + strand, within CSW01_04315at 899.212 kb on - strand, within CSW01_04315at 899.247 kb on + strand, within CSW01_04315at 899.360 kb on + strand, within CSW01_04315at 899.364 kb on + strand, within CSW01_04315at 899.372 kb on - strand, within CSW01_04315at 899.372 kb on - strand, within CSW01_04315at 899.372 kb on - strand, within CSW01_04315at 899.372 kb on - strand, within CSW01_04315at 899.679 kb on + strand, within CSW01_04320at 899.680 kb on + strand, within CSW01_04320at 899.680 kb on + strand, within CSW01_04320at 899.680 kb on + strand, within CSW01_04320at 899.680 kb on + strand, within CSW01_04320at 899.687 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.778 kb on + strand, within CSW01_04320at 899.810 kb on - strand, within CSW01_04320at 899.925 kb on - strand, within CSW01_04320at 899.927 kb on + strand, within CSW01_04320at 899.963 kb on + strand, within CSW01_04320at 899.967 kb on + strand, within CSW01_04320at 899.967 kb on + strand, within CSW01_04320at 899.971 kb on - strand, within CSW01_04320at 899.971 kb on - strand, within CSW01_04320at 899.971 kb on - strand, within CSW01_04320at 900.024 kb on - strand, within CSW01_04320at 900.029 kb on - strand, within CSW01_04320at 900.037 kb on + strand, within CSW01_04320at 900.037 kb on + strand, within CSW01_04320at 900.037 kb on + strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.066 kb on + strand, within CSW01_04320at 900.136 kb on + strand, within CSW01_04320at 900.144 kb on - strand, within CSW01_04320at 900.144 kb on - strand, within CSW01_04320at 900.144 kb on - strand, within CSW01_04320at 900.173 kb on - strandat 900.314 kb on + strandat 900.322 kb on - strandat 900.373 kb on - strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.413 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.419 kb on - strandat 900.534 kb on - strand, within CSW01_04325at 900.534 kb on - strand, within CSW01_04325at 900.539 kb on + strand, within CSW01_04325at 900.547 kb on - strand, within CSW01_04325at 900.549 kb on - strand, within CSW01_04325at 900.551 kb on + strand, within CSW01_04325at 900.554 kb on - strand, within CSW01_04325at 900.559 kb on - strand, within CSW01_04325at 900.559 kb on - strand, within CSW01_04325at 900.577 kb on + strand, within CSW01_04325at 900.584 kb on - strand, within CSW01_04325at 900.594 kb on - strand, within CSW01_04325at 900.614 kb on - strand, within CSW01_04325at 900.645 kb on + strand, within CSW01_04325at 900.645 kb on + strand, within CSW01_04325at 900.645 kb on + strand, within CSW01_04325at 900.645 kb on + strand, within CSW01_04325at 900.645 kb on + strand, within CSW01_04325at 900.645 kb on + strand, within CSW01_04325at 900.645 kb on + strand, within CSW01_04325at 900.645 kb on + strand, within CSW01_04325at 900.653 kb on - strand, within CSW01_04325at 900.653 kb on - strand, within CSW01_04325at 900.653 kb on - strand, within CSW01_04325at 900.653 kb on - strand, within CSW01_04325at 900.653 kb on - strand, within CSW01_04325at 900.653 kb on - strand, within CSW01_04325at 900.653 kb on - strand, within CSW01_04325at 900.653 kb on - strand, within CSW01_04325at 900.653 kb on - strand, within CSW01_04325at 900.662 kb on - strand, within CSW01_04325at 900.695 kb on - strand, within CSW01_04325at 900.695 kb on - strand, within CSW01_04325at 900.695 kb on - strand, within CSW01_04325at 900.790 kb on + strand, within CSW01_04325at 900.890 kb on + strand, within CSW01_04325at 900.910 kb on + strand, within CSW01_04325at 900.910 kb on + strand, within CSW01_04325at 900.918 kb on - strand, within CSW01_04325at 901.075 kb on - strand, within CSW01_04325at 901.082 kb on + strand, within CSW01_04325at 901.097 kb on + strand, within CSW01_04325at 901.105 kb on - strand, within CSW01_04325at 901.121 kb on + strand, within CSW01_04325at 901.124 kb on - strand, within CSW01_04325at 901.124 kb on - strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.176 kb on + strand, within CSW01_04325at 901.179 kb on - strand, within CSW01_04325at 901.184 kb on - strand, within CSW01_04325at 901.184 kb on - strand, within CSW01_04325at 901.198 kb on - strand, within CSW01_04325at 901.211 kb on + strand, within CSW01_04325at 901.219 kb on - strand, within CSW01_04325at 901.219 kb on - strand, within CSW01_04325

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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898,533 + +0.2
898,553 - +0.4
898,561 - -0.1
898,581 + -0.6
898,598 - +0.2
898,618 + +0.0
898,901 + CSW01_04315 0.32 -0.1
898,909 - CSW01_04315 0.33 -1.2
899,005 + CSW01_04315 0.45 +0.7
899,200 - CSW01_04315 0.68 -0.3
899,202 + CSW01_04315 0.68 -0.3
899,212 - CSW01_04315 0.69 -1.4
899,247 + CSW01_04315 0.74 -0.6
899,360 + CSW01_04315 0.87 -1.3
899,364 + CSW01_04315 0.88 -0.7
899,372 - CSW01_04315 0.89 -2.0
899,372 - CSW01_04315 0.89 -0.5
899,372 - CSW01_04315 0.89 -0.4
899,372 - CSW01_04315 0.89 -1.3
899,679 + CSW01_04320 0.28 -0.8
899,680 + CSW01_04320 0.28 -1.0
899,680 + CSW01_04320 0.28 -0.0
899,680 + CSW01_04320 0.28 -0.6
899,680 + CSW01_04320 0.28 -0.6
899,687 - CSW01_04320 0.29 -0.8
899,688 - CSW01_04320 0.29 -2.6
899,688 - CSW01_04320 0.29 -0.1
899,688 - CSW01_04320 0.29 -1.3
899,688 - CSW01_04320 0.29 +1.0
899,688 - CSW01_04320 0.29 -1.4
899,688 - CSW01_04320 0.29 -0.2
899,688 - CSW01_04320 0.29 -0.1
899,688 - CSW01_04320 0.29 -1.8
899,688 - CSW01_04320 0.29 -1.7
899,778 + CSW01_04320 0.41 +0.3
899,810 - CSW01_04320 0.45 -1.7
899,925 - CSW01_04320 0.60 -0.3
899,927 + CSW01_04320 0.61 -1.5
899,963 + CSW01_04320 0.65 -0.3
899,967 + CSW01_04320 0.66 -0.7
899,967 + CSW01_04320 0.66 -0.3
899,971 - CSW01_04320 0.66 -0.2
899,971 - CSW01_04320 0.66 -0.1
899,971 - CSW01_04320 0.66 -0.5
900,024 - CSW01_04320 0.73 -0.3
900,029 - CSW01_04320 0.74 +0.7
900,037 + CSW01_04320 0.75 -0.3
900,037 + CSW01_04320 0.75 -0.6
900,037 + CSW01_04320 0.75 +0.7
900,045 - CSW01_04320 0.76 -1.2
900,045 - CSW01_04320 0.76 +0.6
900,045 - CSW01_04320 0.76 -0.4
900,045 - CSW01_04320 0.76 +0.9
900,045 - CSW01_04320 0.76 -0.4
900,045 - CSW01_04320 0.76 -1.0
900,045 - CSW01_04320 0.76 -0.7
900,045 - CSW01_04320 0.76 -0.0
900,066 + CSW01_04320 0.79 -0.4
900,136 + CSW01_04320 0.88 +1.1
900,144 - CSW01_04320 0.89 -0.7
900,144 - CSW01_04320 0.89 +1.0
900,144 - CSW01_04320 0.89 -0.4
900,173 - -1.0
900,314 + -0.2
900,322 - -0.4
900,373 - -1.1
900,406 + -0.4
900,406 + +0.4
900,406 + -0.4
900,406 + -0.4
900,406 + -2.7
900,406 + -0.5
900,406 + -1.1
900,406 + -0.6
900,413 - -0.4
900,414 - +0.4
900,414 - -1.3
900,414 - -0.6
900,414 - -0.1
900,414 - -1.0
900,414 - +0.1
900,414 - +0.1
900,414 - -0.9
900,414 - -0.2
900,414 - -0.4
900,414 - +0.7
900,419 - -0.4
900,534 - CSW01_04325 0.16 -0.2
900,534 - CSW01_04325 0.16 -0.4
900,539 + CSW01_04325 0.16 -0.2
900,547 - CSW01_04325 0.17 -1.5
900,549 - CSW01_04325 0.17 +0.5
900,551 + CSW01_04325 0.17 -0.8
900,554 - CSW01_04325 0.17 -0.5
900,559 - CSW01_04325 0.17 -0.1
900,559 - CSW01_04325 0.17 -0.2
900,577 + CSW01_04325 0.18 +0.6
900,584 - CSW01_04325 0.19 -0.1
900,594 - CSW01_04325 0.19 +0.2
900,614 - CSW01_04325 0.20 -0.1
900,645 + CSW01_04325 0.22 -0.3
900,645 + CSW01_04325 0.22 +1.3
900,645 + CSW01_04325 0.22 +2.6
900,645 + CSW01_04325 0.22 -0.9
900,645 + CSW01_04325 0.22 -0.7
900,645 + CSW01_04325 0.22 -1.6
900,645 + CSW01_04325 0.22 +0.2
900,645 + CSW01_04325 0.22 -0.9
900,653 - CSW01_04325 0.22 -0.4
900,653 - CSW01_04325 0.22 -0.4
900,653 - CSW01_04325 0.22 -0.5
900,653 - CSW01_04325 0.22 -0.0
900,653 - CSW01_04325 0.22 -0.0
900,653 - CSW01_04325 0.22 +0.3
900,653 - CSW01_04325 0.22 -0.0
900,653 - CSW01_04325 0.22 -0.5
900,653 - CSW01_04325 0.22 -0.1
900,662 - CSW01_04325 0.23 +1.2
900,695 - CSW01_04325 0.25 -1.0
900,695 - CSW01_04325 0.25 +0.4
900,695 - CSW01_04325 0.25 +0.1
900,790 + CSW01_04325 0.30 +0.5
900,890 + CSW01_04325 0.35 -1.1
900,910 + CSW01_04325 0.36 -0.2
900,910 + CSW01_04325 0.36 +0.3
900,918 - CSW01_04325 0.36 +0.1
901,075 - CSW01_04325 0.45 -0.2
901,082 + CSW01_04325 0.45 +0.2
901,097 + CSW01_04325 0.46 +0.1
901,105 - CSW01_04325 0.46 -1.0
901,121 + CSW01_04325 0.47 +0.5
901,124 - CSW01_04325 0.47 +0.9
901,124 - CSW01_04325 0.47 -0.6
901,176 + CSW01_04325 0.50 -0.9
901,176 + CSW01_04325 0.50 -0.3
901,176 + CSW01_04325 0.50 -0.2
901,176 + CSW01_04325 0.50 +0.7
901,176 + CSW01_04325 0.50 -1.1
901,176 + CSW01_04325 0.50 +0.1
901,176 + CSW01_04325 0.50 -2.2
901,176 + CSW01_04325 0.50 -0.4
901,176 + CSW01_04325 0.50 +1.6
901,176 + CSW01_04325 0.50 +0.3
901,176 + CSW01_04325 0.50 -0.1
901,176 + CSW01_04325 0.50 -1.0
901,176 + CSW01_04325 0.50 +0.3
901,176 + CSW01_04325 0.50 -0.4
901,179 - CSW01_04325 0.50 +0.2
901,184 - CSW01_04325 0.51 -0.2
901,184 - CSW01_04325 0.51 -0.6
901,198 - CSW01_04325 0.51 -0.2
901,211 + CSW01_04325 0.52 -0.5
901,219 - CSW01_04325 0.52 -0.3
901,219 - CSW01_04325 0.52 -0.5

Or see this region's nucleotide sequence