Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04180

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04175 and CSW01_04180 are separated by 191 nucleotidesCSW01_04180 and CSW01_04185 are separated by 333 nucleotides CSW01_04175: CSW01_04175 - SWIM zinc finger domain-containing protein, at 862,026 to 863,795 _04175 CSW01_04180: CSW01_04180 - hypothetical protein, at 863,987 to 864,502 _04180 CSW01_04185: CSW01_04185 - nuclease, at 864,836 to 865,540 _04185 Position (kb) 863 864 865Strain fitness (log2 ratio) -2 -1 0 1at 862.991 kb on - strand, within CSW01_04175at 862.991 kb on - strand, within CSW01_04175at 863.026 kb on + strand, within CSW01_04175at 863.028 kb on + strand, within CSW01_04175at 863.039 kb on - strand, within CSW01_04175at 863.115 kb on + strand, within CSW01_04175at 863.120 kb on + strand, within CSW01_04175at 863.120 kb on + strand, within CSW01_04175at 863.120 kb on + strand, within CSW01_04175at 863.125 kb on + strand, within CSW01_04175at 863.125 kb on + strand, within CSW01_04175at 863.125 kb on + strand, within CSW01_04175at 863.128 kb on - strand, within CSW01_04175at 863.128 kb on - strand, within CSW01_04175at 863.128 kb on - strand, within CSW01_04175at 863.128 kb on - strand, within CSW01_04175at 863.128 kb on - strand, within CSW01_04175at 863.133 kb on - strand, within CSW01_04175at 863.133 kb on - strand, within CSW01_04175at 863.154 kb on + strand, within CSW01_04175at 863.209 kb on + strand, within CSW01_04175at 863.222 kb on + strand, within CSW01_04175at 863.227 kb on + strand, within CSW01_04175at 863.230 kb on - strand, within CSW01_04175at 863.230 kb on - strand, within CSW01_04175at 863.235 kb on - strand, within CSW01_04175at 863.311 kb on + strand, within CSW01_04175at 863.327 kb on + strand, within CSW01_04175at 863.376 kb on + strand, within CSW01_04175at 863.384 kb on - strand, within CSW01_04175at 863.396 kb on + strand, within CSW01_04175at 863.437 kb on + strand, within CSW01_04175at 863.541 kb on - strand, within CSW01_04175at 863.570 kb on - strand, within CSW01_04175at 863.570 kb on - strand, within CSW01_04175at 863.570 kb on - strand, within CSW01_04175at 863.579 kb on + strand, within CSW01_04175at 863.621 kb on + strandat 863.733 kb on + strandat 863.754 kb on + strandat 863.790 kb on + strandat 863.797 kb on - strandat 863.798 kb on - strandat 863.816 kb on - strandat 863.878 kb on - strandat 863.995 kb on + strandat 864.068 kb on - strand, within CSW01_04180at 864.090 kb on - strand, within CSW01_04180at 864.097 kb on + strand, within CSW01_04180at 864.097 kb on + strand, within CSW01_04180at 864.097 kb on + strand, within CSW01_04180at 864.108 kb on + strand, within CSW01_04180at 864.116 kb on - strand, within CSW01_04180at 864.116 kb on - strand, within CSW01_04180at 864.118 kb on + strand, within CSW01_04180at 864.118 kb on + strand, within CSW01_04180at 864.120 kb on + strand, within CSW01_04180at 864.126 kb on - strand, within CSW01_04180at 864.126 kb on - strand, within CSW01_04180at 864.126 kb on - strand, within CSW01_04180at 864.132 kb on + strand, within CSW01_04180at 864.163 kb on + strand, within CSW01_04180at 864.195 kb on + strand, within CSW01_04180at 864.203 kb on - strand, within CSW01_04180at 864.209 kb on + strand, within CSW01_04180at 864.215 kb on - strand, within CSW01_04180at 864.215 kb on - strand, within CSW01_04180at 864.277 kb on + strand, within CSW01_04180at 864.287 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.295 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.326 kb on - strand, within CSW01_04180at 864.329 kb on + strand, within CSW01_04180at 864.336 kb on + strand, within CSW01_04180at 864.336 kb on + strand, within CSW01_04180at 864.337 kb on - strand, within CSW01_04180at 864.345 kb on - strand, within CSW01_04180at 864.356 kb on - strand, within CSW01_04180at 864.395 kb on + strand, within CSW01_04180at 864.506 kb on + strandat 864.536 kb on + strandat 864.544 kb on - strandat 864.544 kb on - strandat 864.549 kb on - strandat 864.556 kb on - strandat 864.629 kb on - strandat 864.641 kb on + strandat 864.663 kb on - strandat 864.671 kb on - strandat 864.712 kb on + strandat 864.751 kb on - strandat 864.751 kb on - strandat 864.789 kb on + strandat 864.856 kb on + strandat 864.864 kb on - strandat 864.864 kb on - strandat 864.864 kb on - strandat 865.081 kb on - strand, within CSW01_04185at 865.091 kb on - strand, within CSW01_04185at 865.099 kb on + strand, within CSW01_04185at 865.100 kb on + strand, within CSW01_04185at 865.100 kb on + strand, within CSW01_04185at 865.100 kb on + strand, within CSW01_04185at 865.100 kb on + strand, within CSW01_04185at 865.100 kb on + strand, within CSW01_04185at 865.100 kb on + strand, within CSW01_04185at 865.100 kb on + strand, within CSW01_04185at 865.100 kb on + strand, within CSW01_04185at 865.100 kb on + strand, within CSW01_04185at 865.100 kb on + strand, within CSW01_04185at 865.108 kb on - strand, within CSW01_04185at 865.108 kb on - strand, within CSW01_04185at 865.108 kb on - strand, within CSW01_04185at 865.108 kb on - strand, within CSW01_04185at 865.108 kb on - strand, within CSW01_04185at 865.108 kb on - strand, within CSW01_04185at 865.108 kb on - strand, within CSW01_04185at 865.108 kb on - strand, within CSW01_04185at 865.108 kb on - strand, within CSW01_04185at 865.111 kb on + strand, within CSW01_04185at 865.111 kb on + strand, within CSW01_04185at 865.115 kb on + strand, within CSW01_04185at 865.117 kb on - strand, within CSW01_04185at 865.118 kb on - strand, within CSW01_04185at 865.125 kb on - strand, within CSW01_04185at 865.125 kb on - strand, within CSW01_04185at 865.155 kb on + strand, within CSW01_04185at 865.177 kb on + strand, within CSW01_04185at 865.220 kb on + strand, within CSW01_04185at 865.225 kb on + strand, within CSW01_04185at 865.232 kb on + strand, within CSW01_04185at 865.232 kb on + strand, within CSW01_04185at 865.232 kb on + strand, within CSW01_04185at 865.232 kb on + strand, within CSW01_04185at 865.232 kb on + strand, within CSW01_04185at 865.232 kb on + strand, within CSW01_04185at 865.232 kb on + strand, within CSW01_04185at 865.237 kb on + strand, within CSW01_04185at 865.240 kb on - strand, within CSW01_04185at 865.240 kb on - strand, within CSW01_04185at 865.240 kb on - strand, within CSW01_04185at 865.240 kb on - strand, within CSW01_04185at 865.240 kb on - strand, within CSW01_04185at 865.298 kb on + strand, within CSW01_04185at 865.306 kb on - strand, within CSW01_04185at 865.357 kb on + strand, within CSW01_04185at 865.365 kb on - strand, within CSW01_04185at 865.387 kb on - strand, within CSW01_04185at 865.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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862,991 - CSW01_04175 0.55 -0.1
862,991 - CSW01_04175 0.55 -0.7
863,026 + CSW01_04175 0.56 -0.7
863,028 + CSW01_04175 0.57 -0.6
863,039 - CSW01_04175 0.57 +0.7
863,115 + CSW01_04175 0.62 -0.8
863,120 + CSW01_04175 0.62 +0.2
863,120 + CSW01_04175 0.62 -1.0
863,120 + CSW01_04175 0.62 -0.4
863,125 + CSW01_04175 0.62 +0.2
863,125 + CSW01_04175 0.62 -0.1
863,125 + CSW01_04175 0.62 +0.1
863,128 - CSW01_04175 0.62 +0.9
863,128 - CSW01_04175 0.62 +0.7
863,128 - CSW01_04175 0.62 -0.9
863,128 - CSW01_04175 0.62 +0.3
863,128 - CSW01_04175 0.62 +0.1
863,133 - CSW01_04175 0.63 -0.7
863,133 - CSW01_04175 0.63 +0.3
863,154 + CSW01_04175 0.64 +0.6
863,209 + CSW01_04175 0.67 +0.3
863,222 + CSW01_04175 0.68 +0.1
863,227 + CSW01_04175 0.68 -0.1
863,230 - CSW01_04175 0.68 +0.8
863,230 - CSW01_04175 0.68 -0.4
863,235 - CSW01_04175 0.68 +0.5
863,311 + CSW01_04175 0.73 +0.1
863,327 + CSW01_04175 0.74 +0.7
863,376 + CSW01_04175 0.76 -0.1
863,384 - CSW01_04175 0.77 +0.5
863,396 + CSW01_04175 0.77 -0.4
863,437 + CSW01_04175 0.80 +0.4
863,541 - CSW01_04175 0.86 +0.5
863,570 - CSW01_04175 0.87 -0.1
863,570 - CSW01_04175 0.87 +0.1
863,570 - CSW01_04175 0.87 -0.6
863,579 + CSW01_04175 0.88 +0.8
863,621 + -1.0
863,733 + +0.7
863,754 + -0.0
863,790 + -0.2
863,797 - -0.2
863,798 - -0.2
863,816 - -0.9
863,878 - +0.4
863,995 + +0.7
864,068 - CSW01_04180 0.16 -1.5
864,090 - CSW01_04180 0.20 +1.0
864,097 + CSW01_04180 0.21 -0.5
864,097 + CSW01_04180 0.21 +0.1
864,097 + CSW01_04180 0.21 -0.6
864,108 + CSW01_04180 0.23 +0.1
864,116 - CSW01_04180 0.25 +0.5
864,116 - CSW01_04180 0.25 +0.7
864,118 + CSW01_04180 0.25 -0.1
864,118 + CSW01_04180 0.25 -0.0
864,120 + CSW01_04180 0.26 -0.7
864,126 - CSW01_04180 0.27 -0.2
864,126 - CSW01_04180 0.27 +0.1
864,126 - CSW01_04180 0.27 +0.7
864,132 + CSW01_04180 0.28 -0.6
864,163 + CSW01_04180 0.34 +0.3
864,195 + CSW01_04180 0.40 +0.1
864,203 - CSW01_04180 0.42 -0.2
864,209 + CSW01_04180 0.43 -0.1
864,215 - CSW01_04180 0.44 +0.1
864,215 - CSW01_04180 0.44 +0.4
864,277 + CSW01_04180 0.56 -0.2
864,287 + CSW01_04180 0.58 +0.3
864,292 + CSW01_04180 0.59 +0.2
864,292 + CSW01_04180 0.59 +0.6
864,292 + CSW01_04180 0.59 +0.5
864,292 + CSW01_04180 0.59 -0.2
864,292 + CSW01_04180 0.59 -0.6
864,292 + CSW01_04180 0.59 -0.6
864,292 + CSW01_04180 0.59 -0.2
864,292 + CSW01_04180 0.59 -0.6
864,292 + CSW01_04180 0.59 -1.4
864,292 + CSW01_04180 0.59 -0.1
864,292 + CSW01_04180 0.59 +0.1
864,292 + CSW01_04180 0.59 -1.7
864,292 + CSW01_04180 0.59 +1.1
864,292 + CSW01_04180 0.59 +0.3
864,292 + CSW01_04180 0.59 -0.3
864,292 + CSW01_04180 0.59 +0.2
864,292 + CSW01_04180 0.59 -0.9
864,295 - CSW01_04180 0.60 +0.1
864,300 - CSW01_04180 0.61 +0.1
864,300 - CSW01_04180 0.61 +0.2
864,300 - CSW01_04180 0.61 -0.3
864,300 - CSW01_04180 0.61 -1.2
864,300 - CSW01_04180 0.61 -2.4
864,300 - CSW01_04180 0.61 -0.2
864,300 - CSW01_04180 0.61 -1.2
864,326 - CSW01_04180 0.66 -0.6
864,329 + CSW01_04180 0.66 -0.5
864,336 + CSW01_04180 0.68 -0.7
864,336 + CSW01_04180 0.68 +0.1
864,337 - CSW01_04180 0.68 +0.3
864,345 - CSW01_04180 0.69 -0.8
864,356 - CSW01_04180 0.72 -2.0
864,395 + CSW01_04180 0.79 -0.3
864,506 + +0.1
864,536 + -0.2
864,544 - -0.7
864,544 - -0.3
864,549 - +1.7
864,556 - -0.8
864,629 - -0.4
864,641 + -0.0
864,663 - +0.3
864,671 - +0.2
864,712 + +1.1
864,751 - +0.0
864,751 - -0.7
864,789 + -1.3
864,856 + -2.2
864,864 - -1.2
864,864 - -1.2
864,864 - -0.2
865,081 - CSW01_04185 0.35 -1.1
865,091 - CSW01_04185 0.36 +0.2
865,099 + CSW01_04185 0.37 -0.5
865,100 + CSW01_04185 0.37 -0.1
865,100 + CSW01_04185 0.37 -1.4
865,100 + CSW01_04185 0.37 +0.6
865,100 + CSW01_04185 0.37 -1.4
865,100 + CSW01_04185 0.37 +0.5
865,100 + CSW01_04185 0.37 -1.5
865,100 + CSW01_04185 0.37 -0.5
865,100 + CSW01_04185 0.37 +0.2
865,100 + CSW01_04185 0.37 +0.3
865,100 + CSW01_04185 0.37 +0.1
865,108 - CSW01_04185 0.39 -1.6
865,108 - CSW01_04185 0.39 -0.2
865,108 - CSW01_04185 0.39 +0.9
865,108 - CSW01_04185 0.39 +0.8
865,108 - CSW01_04185 0.39 +0.4
865,108 - CSW01_04185 0.39 -0.5
865,108 - CSW01_04185 0.39 -0.0
865,108 - CSW01_04185 0.39 -0.4
865,108 - CSW01_04185 0.39 -0.0
865,111 + CSW01_04185 0.39 -0.1
865,111 + CSW01_04185 0.39 -0.9
865,115 + CSW01_04185 0.40 +0.0
865,117 - CSW01_04185 0.40 -0.5
865,118 - CSW01_04185 0.40 +0.1
865,125 - CSW01_04185 0.41 +0.8
865,125 - CSW01_04185 0.41 -0.5
865,155 + CSW01_04185 0.45 -0.9
865,177 + CSW01_04185 0.48 +0.5
865,220 + CSW01_04185 0.54 +0.2
865,225 + CSW01_04185 0.55 +0.1
865,232 + CSW01_04185 0.56 +0.6
865,232 + CSW01_04185 0.56 +1.0
865,232 + CSW01_04185 0.56 -0.8
865,232 + CSW01_04185 0.56 -0.5
865,232 + CSW01_04185 0.56 -1.9
865,232 + CSW01_04185 0.56 +0.3
865,232 + CSW01_04185 0.56 +0.7
865,237 + CSW01_04185 0.57 -0.6
865,240 - CSW01_04185 0.57 +1.0
865,240 - CSW01_04185 0.57 +0.5
865,240 - CSW01_04185 0.57 -0.7
865,240 - CSW01_04185 0.57 +0.3
865,240 - CSW01_04185 0.57 +0.6
865,298 + CSW01_04185 0.66 -0.4
865,306 - CSW01_04185 0.67 -0.1
865,357 + CSW01_04185 0.74 -0.3
865,365 - CSW01_04185 0.75 +0.8
865,387 - CSW01_04185 0.78 -0.2
865,493 - -0.1

Or see this region's nucleotide sequence