Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03840

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03830 and CSW01_03835 are separated by 152 nucleotidesCSW01_03835 and CSW01_03840 are separated by 229 nucleotidesCSW01_03840 and CSW01_03845 overlap by 46 nucleotidesCSW01_03845 and CSW01_03850 are separated by 10 nucleotides CSW01_03830: CSW01_03830 - isocitrate lyase, at 789,495 to 790,808 _03830 CSW01_03835: CSW01_03835 - acetoin utilization protein AcuB, at 790,961 to 791,470 _03835 CSW01_03840: CSW01_03840 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 791,700 to 792,758 _03840 CSW01_03845: CSW01_03845 - hypothetical protein, at 792,713 to 792,976 _03845 CSW01_03850: CSW01_03850 - tRNA guanosine(34) transglycosylase Tgt, at 792,987 to 794,126 _03850 Position (kb) 791 792 793Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 790.715 kb on + strandat 790.733 kb on + strandat 790.741 kb on - strandat 790.743 kb on + strandat 790.778 kb on - strandat 790.817 kb on + strandat 790.878 kb on - strandat 790.884 kb on + strandat 790.892 kb on - strandat 790.975 kb on - strandat 791.158 kb on + strand, within CSW01_03835at 791.163 kb on + strand, within CSW01_03835at 791.172 kb on + strand, within CSW01_03835at 791.180 kb on - strand, within CSW01_03835at 791.182 kb on + strand, within CSW01_03835at 791.215 kb on - strand, within CSW01_03835at 791.215 kb on - strand, within CSW01_03835at 791.222 kb on - strand, within CSW01_03835at 791.292 kb on + strand, within CSW01_03835at 791.326 kb on + strand, within CSW01_03835at 791.370 kb on - strand, within CSW01_03835at 791.400 kb on + strand, within CSW01_03835at 791.408 kb on - strand, within CSW01_03835at 791.411 kb on + strand, within CSW01_03835at 791.424 kb on - strandat 791.424 kb on - strandat 791.496 kb on - strandat 791.543 kb on + strandat 791.561 kb on + strandat 791.569 kb on - strandat 791.597 kb on + strandat 791.597 kb on - strandat 791.605 kb on - strandat 791.612 kb on + strandat 791.632 kb on + strandat 791.638 kb on + strandat 791.638 kb on + strandat 791.640 kb on - strandat 791.646 kb on - strandat 791.646 kb on - strandat 791.690 kb on + strandat 791.868 kb on + strand, within CSW01_03840at 791.878 kb on + strand, within CSW01_03840at 791.989 kb on + strand, within CSW01_03840at 792.036 kb on + strand, within CSW01_03840at 792.062 kb on - strand, within CSW01_03840at 792.071 kb on - strand, within CSW01_03840at 792.201 kb on + strand, within CSW01_03840at 792.201 kb on - strand, within CSW01_03840at 792.209 kb on - strand, within CSW01_03840at 792.289 kb on - strand, within CSW01_03840at 792.296 kb on - strand, within CSW01_03840at 792.304 kb on + strand, within CSW01_03840at 792.304 kb on + strand, within CSW01_03840at 792.304 kb on + strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.331 kb on + strand, within CSW01_03840at 792.331 kb on + strand, within CSW01_03840at 792.332 kb on + strand, within CSW01_03840at 792.332 kb on + strand, within CSW01_03840at 792.340 kb on - strand, within CSW01_03840at 792.459 kb on + strand, within CSW01_03840at 792.466 kb on - strand, within CSW01_03840at 792.467 kb on - strand, within CSW01_03840at 792.621 kb on + strand, within CSW01_03840at 792.621 kb on + strand, within CSW01_03840at 792.660 kb on - strandat 792.662 kb on + strandat 792.862 kb on - strand, within CSW01_03845at 792.879 kb on + strand, within CSW01_03845at 792.921 kb on - strand, within CSW01_03845at 792.968 kb on - strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.117 kb on + strand, within CSW01_03850at 793.165 kb on + strand, within CSW01_03850at 793.173 kb on - strand, within CSW01_03850at 793.197 kb on - strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.256 kb on - strand, within CSW01_03850at 793.275 kb on - strand, within CSW01_03850at 793.295 kb on - strand, within CSW01_03850at 793.422 kb on - strand, within CSW01_03850at 793.423 kb on + strand, within CSW01_03850at 793.424 kb on + strand, within CSW01_03850at 793.432 kb on - strand, within CSW01_03850at 793.432 kb on - strand, within CSW01_03850at 793.510 kb on - strand, within CSW01_03850at 793.626 kb on - strand, within CSW01_03850at 793.633 kb on + strand, within CSW01_03850at 793.633 kb on + strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.667 kb on - strand, within CSW01_03850at 793.677 kb on + strand, within CSW01_03850at 793.687 kb on + strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.737 kb on + strand, within CSW01_03850at 793.748 kb on + strand, within CSW01_03850

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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790,715 + -0.4
790,733 + -0.7
790,741 - +0.5
790,743 + -0.2
790,778 - +0.2
790,817 + +0.3
790,878 - +0.3
790,884 + +0.8
790,892 - +0.7
790,975 - +1.4
791,158 + CSW01_03835 0.39 -0.0
791,163 + CSW01_03835 0.40 -0.2
791,172 + CSW01_03835 0.41 +0.9
791,180 - CSW01_03835 0.43 -0.3
791,182 + CSW01_03835 0.43 -0.1
791,215 - CSW01_03835 0.50 +0.5
791,215 - CSW01_03835 0.50 +0.7
791,222 - CSW01_03835 0.51 +1.0
791,292 + CSW01_03835 0.65 +0.1
791,326 + CSW01_03835 0.72 +0.3
791,370 - CSW01_03835 0.80 -0.2
791,400 + CSW01_03835 0.86 -0.5
791,408 - CSW01_03835 0.88 +0.6
791,411 + CSW01_03835 0.88 -0.5
791,424 - +3.3
791,424 - +0.4
791,496 - -0.5
791,543 + +0.2
791,561 + +0.2
791,569 - +0.3
791,597 + -1.2
791,597 - -0.2
791,605 - +0.3
791,612 + +0.0
791,632 + +0.1
791,638 + -0.3
791,638 + -0.5
791,640 - +0.7
791,646 - -0.3
791,646 - +0.1
791,690 + +2.5
791,868 + CSW01_03840 0.16 +0.3
791,878 + CSW01_03840 0.17 -0.2
791,989 + CSW01_03840 0.27 +0.1
792,036 + CSW01_03840 0.32 -0.6
792,062 - CSW01_03840 0.34 -1.1
792,071 - CSW01_03840 0.35 -0.5
792,201 + CSW01_03840 0.47 -1.3
792,201 - CSW01_03840 0.47 -0.8
792,209 - CSW01_03840 0.48 -1.1
792,289 - CSW01_03840 0.56 -0.7
792,296 - CSW01_03840 0.56 -2.0
792,304 + CSW01_03840 0.57 -0.0
792,304 + CSW01_03840 0.57 -0.9
792,304 + CSW01_03840 0.57 -0.9
792,312 - CSW01_03840 0.58 -0.5
792,312 - CSW01_03840 0.58 +0.2
792,312 - CSW01_03840 0.58 +0.2
792,312 - CSW01_03840 0.58 +0.0
792,331 + CSW01_03840 0.60 +0.6
792,331 + CSW01_03840 0.60 +0.7
792,332 + CSW01_03840 0.60 -1.1
792,332 + CSW01_03840 0.60 -0.6
792,340 - CSW01_03840 0.60 +1.3
792,459 + CSW01_03840 0.72 -1.1
792,466 - CSW01_03840 0.72 -0.1
792,467 - CSW01_03840 0.72 +0.8
792,621 + CSW01_03840 0.87 -0.9
792,621 + CSW01_03840 0.87 -0.2
792,660 - -1.3
792,662 + -2.0
792,862 - CSW01_03845 0.56 +1.8
792,879 + CSW01_03845 0.63 -2.8
792,921 - CSW01_03845 0.79 +0.6
792,968 - +0.2
793,062 + +0.0
793,062 + +0.3
793,062 + -0.4
793,062 + -0.6
793,062 + -1.6
793,062 + +0.7
793,070 - +0.2
793,070 - -3.4
793,070 - +1.9
793,070 - -0.9
793,070 - +0.9
793,070 - -1.3
793,117 + CSW01_03850 0.11 -0.1
793,165 + CSW01_03850 0.16 -1.0
793,173 - CSW01_03850 0.16 -0.4
793,197 - CSW01_03850 0.18 -0.1
793,243 + CSW01_03850 0.22 +0.3
793,243 + CSW01_03850 0.22 -0.1
793,243 + CSW01_03850 0.22 -0.8
793,243 + CSW01_03850 0.22 -0.1
793,243 + CSW01_03850 0.22 -1.1
793,251 - CSW01_03850 0.23 -0.3
793,251 - CSW01_03850 0.23 -0.6
793,251 - CSW01_03850 0.23 -2.7
793,251 - CSW01_03850 0.23 -1.3
793,251 - CSW01_03850 0.23 +0.8
793,251 - CSW01_03850 0.23 -0.9
793,251 - CSW01_03850 0.23 -0.4
793,251 - CSW01_03850 0.23 -2.7
793,251 - CSW01_03850 0.23 +0.9
793,256 - CSW01_03850 0.24 -0.0
793,275 - CSW01_03850 0.25 -1.5
793,295 - CSW01_03850 0.27 +0.3
793,422 - CSW01_03850 0.38 +0.3
793,423 + CSW01_03850 0.38 -0.3
793,424 + CSW01_03850 0.38 +0.7
793,432 - CSW01_03850 0.39 +0.9
793,432 - CSW01_03850 0.39 -0.3
793,510 - CSW01_03850 0.46 +1.0
793,626 - CSW01_03850 0.56 -1.3
793,633 + CSW01_03850 0.57 -1.2
793,633 + CSW01_03850 0.57 -0.4
793,641 - CSW01_03850 0.57 -0.7
793,641 - CSW01_03850 0.57 -0.8
793,641 - CSW01_03850 0.57 -1.0
793,667 - CSW01_03850 0.60 +2.0
793,677 + CSW01_03850 0.61 +0.3
793,687 + CSW01_03850 0.61 -1.8
793,695 - CSW01_03850 0.62 -0.1
793,695 - CSW01_03850 0.62 -0.7
793,695 - CSW01_03850 0.62 -1.3
793,737 + CSW01_03850 0.66 +0.5
793,748 + CSW01_03850 0.67 +0.1

Or see this region's nucleotide sequence