Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03240

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03230 and CSW01_03235 overlap by 4 nucleotidesCSW01_03235 and CSW01_03240 overlap by 97 nucleotidesCSW01_03240 and CSW01_03245 are separated by 56 nucleotides CSW01_03230: CSW01_03230 - beta-N-acetylhexosaminidase, at 645,617 to 647,530 _03230 CSW01_03235: CSW01_03235 - N-acetylglucosamine kinase, at 647,527 to 648,504 _03235 CSW01_03240: CSW01_03240 - chitobiase, at 648,408 to 650,132 _03240 CSW01_03245: CSW01_03245 - ABC transporter ATP-binding protein, at 650,189 to 651,184 _03245 Position (kb) 648 649 650 651Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 647.440 kb on + strandat 647.459 kb on + strandat 647.496 kb on + strandat 647.545 kb on - strandat 647.561 kb on - strandat 647.580 kb on - strandat 647.580 kb on - strandat 647.620 kb on - strandat 647.627 kb on + strand, within CSW01_03235at 647.627 kb on + strand, within CSW01_03235at 647.630 kb on + strand, within CSW01_03235at 647.633 kb on - strand, within CSW01_03235at 647.638 kb on - strand, within CSW01_03235at 647.655 kb on + strand, within CSW01_03235at 647.655 kb on - strand, within CSW01_03235at 647.663 kb on - strand, within CSW01_03235at 647.690 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.836 kb on - strand, within CSW01_03235at 647.836 kb on - strand, within CSW01_03235at 647.882 kb on + strand, within CSW01_03235at 647.943 kb on + strand, within CSW01_03235at 647.950 kb on + strand, within CSW01_03235at 647.958 kb on - strand, within CSW01_03235at 647.968 kb on + strand, within CSW01_03235at 648.074 kb on + strand, within CSW01_03235at 648.128 kb on - strand, within CSW01_03235at 648.131 kb on + strand, within CSW01_03235at 648.131 kb on + strand, within CSW01_03235at 648.150 kb on + strand, within CSW01_03235at 648.187 kb on + strand, within CSW01_03235at 648.190 kb on - strand, within CSW01_03235at 648.238 kb on + strand, within CSW01_03235at 648.246 kb on - strand, within CSW01_03235at 648.288 kb on + strand, within CSW01_03235at 648.296 kb on - strand, within CSW01_03235at 648.296 kb on - strand, within CSW01_03235at 648.299 kb on + strand, within CSW01_03235at 648.307 kb on - strand, within CSW01_03235at 648.325 kb on + strand, within CSW01_03235at 648.336 kb on + strand, within CSW01_03235at 648.396 kb on - strand, within CSW01_03235at 648.431 kb on - strandat 648.502 kb on - strandat 648.541 kb on + strandat 648.594 kb on - strand, within CSW01_03240at 648.618 kb on + strand, within CSW01_03240at 648.648 kb on - strand, within CSW01_03240at 648.653 kb on - strand, within CSW01_03240at 648.675 kb on + strand, within CSW01_03240at 648.769 kb on + strand, within CSW01_03240at 648.837 kb on + strand, within CSW01_03240at 648.845 kb on - strand, within CSW01_03240at 648.845 kb on - strand, within CSW01_03240at 648.871 kb on + strand, within CSW01_03240at 648.880 kb on + strand, within CSW01_03240at 648.920 kb on + strand, within CSW01_03240at 648.975 kb on - strand, within CSW01_03240at 648.975 kb on - strand, within CSW01_03240at 648.988 kb on + strand, within CSW01_03240at 648.996 kb on - strand, within CSW01_03240at 649.080 kb on - strand, within CSW01_03240at 649.082 kb on + strand, within CSW01_03240at 649.087 kb on + strand, within CSW01_03240at 649.087 kb on + strand, within CSW01_03240at 649.087 kb on + strand, within CSW01_03240at 649.087 kb on + strand, within CSW01_03240at 649.087 kb on + strand, within CSW01_03240at 649.087 kb on + strand, within CSW01_03240at 649.095 kb on - strand, within CSW01_03240at 649.095 kb on - strand, within CSW01_03240at 649.095 kb on - strand, within CSW01_03240at 649.095 kb on - strand, within CSW01_03240at 649.129 kb on + strand, within CSW01_03240at 649.137 kb on - strand, within CSW01_03240at 649.146 kb on + strand, within CSW01_03240at 649.183 kb on - strand, within CSW01_03240at 649.203 kb on + strand, within CSW01_03240at 649.203 kb on + strand, within CSW01_03240at 649.211 kb on - strand, within CSW01_03240at 649.213 kb on + strand, within CSW01_03240at 649.213 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.226 kb on - strand, within CSW01_03240at 649.246 kb on + strand, within CSW01_03240at 649.263 kb on + strand, within CSW01_03240at 649.334 kb on + strand, within CSW01_03240at 649.377 kb on + strand, within CSW01_03240at 649.377 kb on + strand, within CSW01_03240at 649.385 kb on - strand, within CSW01_03240at 649.385 kb on - strand, within CSW01_03240at 649.385 kb on - strand, within CSW01_03240at 649.385 kb on - strand, within CSW01_03240at 649.444 kb on - strand, within CSW01_03240at 649.563 kb on - strand, within CSW01_03240at 649.608 kb on + strand, within CSW01_03240at 649.614 kb on + strand, within CSW01_03240at 649.635 kb on + strand, within CSW01_03240at 649.637 kb on + strand, within CSW01_03240at 649.711 kb on + strand, within CSW01_03240at 649.724 kb on - strand, within CSW01_03240at 649.733 kb on + strand, within CSW01_03240at 649.741 kb on - strand, within CSW01_03240at 649.758 kb on - strand, within CSW01_03240at 649.790 kb on + strand, within CSW01_03240at 649.790 kb on + strand, within CSW01_03240at 649.790 kb on + strand, within CSW01_03240at 649.798 kb on - strand, within CSW01_03240at 649.798 kb on - strand, within CSW01_03240at 649.798 kb on - strand, within CSW01_03240at 649.803 kb on - strand, within CSW01_03240at 649.803 kb on - strand, within CSW01_03240at 649.808 kb on + strand, within CSW01_03240at 649.808 kb on + strand, within CSW01_03240at 649.816 kb on - strand, within CSW01_03240at 650.070 kb on + strandat 650.078 kb on - strandat 650.078 kb on - strandat 650.078 kb on - strandat 650.084 kb on + strandat 650.092 kb on - strandat 650.092 kb on - strandat 650.092 kb on - strandat 650.092 kb on - strandat 650.165 kb on + strandat 650.172 kb on + strandat 650.173 kb on - strandat 650.401 kb on - strand, within CSW01_03245at 650.403 kb on - strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.414 kb on - strand, within CSW01_03245at 650.414 kb on - strand, within CSW01_03245at 650.414 kb on - strand, within CSW01_03245at 650.414 kb on - strand, within CSW01_03245at 650.414 kb on - strand, within CSW01_03245at 650.414 kb on - strand, within CSW01_03245at 650.416 kb on + strand, within CSW01_03245at 650.442 kb on + strand, within CSW01_03245at 650.528 kb on + strand, within CSW01_03245at 650.534 kb on - strand, within CSW01_03245at 650.534 kb on - strand, within CSW01_03245at 650.536 kb on - strand, within CSW01_03245at 650.536 kb on - strand, within CSW01_03245at 650.553 kb on + strand, within CSW01_03245at 650.576 kb on + strand, within CSW01_03245at 650.613 kb on - strand, within CSW01_03245at 650.613 kb on - strand, within CSW01_03245at 650.654 kb on + strand, within CSW01_03245at 650.667 kb on - strand, within CSW01_03245at 650.695 kb on - strand, within CSW01_03245at 650.848 kb on + strand, within CSW01_03245at 650.856 kb on - strand, within CSW01_03245at 650.887 kb on + strand, within CSW01_03245at 650.888 kb on + strand, within CSW01_03245at 650.911 kb on - strand, within CSW01_03245at 650.941 kb on - strand, within CSW01_03245at 650.941 kb on - strand, within CSW01_03245at 650.949 kb on + strand, within CSW01_03245at 650.965 kb on + strand, within CSW01_03245at 650.965 kb on + strand, within CSW01_03245at 650.973 kb on - strand, within CSW01_03245at 650.973 kb on - strand, within CSW01_03245at 651.014 kb on - strand, within CSW01_03245at 651.025 kb on - strand, within CSW01_03245

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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647,440 + -0.2
647,459 + -1.1
647,496 + +0.2
647,545 - -0.1
647,561 - -0.6
647,580 - +0.1
647,580 - -0.4
647,620 - +0.4
647,627 + CSW01_03235 0.10 +0.3
647,627 + CSW01_03235 0.10 +0.2
647,630 + CSW01_03235 0.11 -0.7
647,633 - CSW01_03235 0.11 -0.7
647,638 - CSW01_03235 0.11 +0.1
647,655 + CSW01_03235 0.13 +0.7
647,655 - CSW01_03235 0.13 -0.6
647,663 - CSW01_03235 0.14 -0.2
647,690 + CSW01_03235 0.17 -0.1
647,828 + CSW01_03235 0.31 +0.9
647,828 + CSW01_03235 0.31 +0.1
647,828 + CSW01_03235 0.31 +0.1
647,828 + CSW01_03235 0.31 -0.4
647,828 + CSW01_03235 0.31 +0.2
647,836 - CSW01_03235 0.32 +0.6
647,836 - CSW01_03235 0.32 -0.4
647,882 + CSW01_03235 0.36 +3.8
647,943 + CSW01_03235 0.43 +0.5
647,950 + CSW01_03235 0.43 -0.5
647,958 - CSW01_03235 0.44 +0.4
647,968 + CSW01_03235 0.45 +0.9
648,074 + CSW01_03235 0.56 +0.1
648,128 - CSW01_03235 0.61 +0.4
648,131 + CSW01_03235 0.62 +0.1
648,131 + CSW01_03235 0.62 -0.3
648,150 + CSW01_03235 0.64 +0.4
648,187 + CSW01_03235 0.67 +0.5
648,190 - CSW01_03235 0.68 -0.5
648,238 + CSW01_03235 0.73 +0.6
648,246 - CSW01_03235 0.74 +1.5
648,288 + CSW01_03235 0.78 -0.1
648,296 - CSW01_03235 0.79 +0.1
648,296 - CSW01_03235 0.79 +0.4
648,299 + CSW01_03235 0.79 +0.6
648,307 - CSW01_03235 0.80 -0.0
648,325 + CSW01_03235 0.82 +1.2
648,336 + CSW01_03235 0.83 +0.9
648,396 - CSW01_03235 0.89 +0.5
648,431 - +0.5
648,502 - +0.4
648,541 + -1.9
648,594 - CSW01_03240 0.11 +1.0
648,618 + CSW01_03240 0.12 +2.2
648,648 - CSW01_03240 0.14 -0.3
648,653 - CSW01_03240 0.14 -0.1
648,675 + CSW01_03240 0.15 +0.0
648,769 + CSW01_03240 0.21 +0.2
648,837 + CSW01_03240 0.25 +0.2
648,845 - CSW01_03240 0.25 +0.7
648,845 - CSW01_03240 0.25 -0.6
648,871 + CSW01_03240 0.27 +0.4
648,880 + CSW01_03240 0.27 +0.4
648,920 + CSW01_03240 0.30 +1.6
648,975 - CSW01_03240 0.33 +0.5
648,975 - CSW01_03240 0.33 +0.3
648,988 + CSW01_03240 0.34 +0.6
648,996 - CSW01_03240 0.34 -0.2
649,080 - CSW01_03240 0.39 +0.5
649,082 + CSW01_03240 0.39 +0.4
649,087 + CSW01_03240 0.39 +1.9
649,087 + CSW01_03240 0.39 +0.7
649,087 + CSW01_03240 0.39 +0.7
649,087 + CSW01_03240 0.39 +0.6
649,087 + CSW01_03240 0.39 -0.4
649,087 + CSW01_03240 0.39 -0.1
649,095 - CSW01_03240 0.40 +0.3
649,095 - CSW01_03240 0.40 -0.0
649,095 - CSW01_03240 0.40 +0.0
649,095 - CSW01_03240 0.40 -0.6
649,129 + CSW01_03240 0.42 +1.4
649,137 - CSW01_03240 0.42 +1.2
649,146 + CSW01_03240 0.43 -1.3
649,183 - CSW01_03240 0.45 +0.6
649,203 + CSW01_03240 0.46 +0.0
649,203 + CSW01_03240 0.46 +1.5
649,211 - CSW01_03240 0.47 -0.8
649,213 + CSW01_03240 0.47 -0.3
649,213 + CSW01_03240 0.47 -0.1
649,218 + CSW01_03240 0.47 +0.7
649,218 + CSW01_03240 0.47 +0.3
649,218 + CSW01_03240 0.47 +0.4
649,218 + CSW01_03240 0.47 +0.6
649,218 + CSW01_03240 0.47 +1.8
649,226 - CSW01_03240 0.47 +0.1
649,246 + CSW01_03240 0.49 -0.3
649,263 + CSW01_03240 0.50 +0.6
649,334 + CSW01_03240 0.54 -0.6
649,377 + CSW01_03240 0.56 -1.2
649,377 + CSW01_03240 0.56 -0.2
649,385 - CSW01_03240 0.57 -0.1
649,385 - CSW01_03240 0.57 +0.1
649,385 - CSW01_03240 0.57 -0.1
649,385 - CSW01_03240 0.57 +0.9
649,444 - CSW01_03240 0.60 +0.6
649,563 - CSW01_03240 0.67 +0.1
649,608 + CSW01_03240 0.70 +0.6
649,614 + CSW01_03240 0.70 -0.1
649,635 + CSW01_03240 0.71 -1.0
649,637 + CSW01_03240 0.71 +0.9
649,711 + CSW01_03240 0.76 +1.7
649,724 - CSW01_03240 0.76 +0.5
649,733 + CSW01_03240 0.77 -1.2
649,741 - CSW01_03240 0.77 +0.2
649,758 - CSW01_03240 0.78 +0.5
649,790 + CSW01_03240 0.80 -0.3
649,790 + CSW01_03240 0.80 -0.0
649,790 + CSW01_03240 0.80 +0.8
649,798 - CSW01_03240 0.81 +0.2
649,798 - CSW01_03240 0.81 +0.9
649,798 - CSW01_03240 0.81 -1.6
649,803 - CSW01_03240 0.81 +0.4
649,803 - CSW01_03240 0.81 +2.2
649,808 + CSW01_03240 0.81 -1.0
649,808 + CSW01_03240 0.81 +0.1
649,816 - CSW01_03240 0.82 +0.4
650,070 + -0.1
650,078 - +0.5
650,078 - -1.6
650,078 - +1.2
650,084 + -0.5
650,092 - +0.9
650,092 - -0.2
650,092 - +0.1
650,092 - +0.2
650,165 + +1.0
650,172 + +1.6
650,173 - +0.2
650,401 - CSW01_03245 0.21 +0.3
650,403 - CSW01_03245 0.21 +0.4
650,406 + CSW01_03245 0.22 +2.4
650,406 + CSW01_03245 0.22 -2.2
650,406 + CSW01_03245 0.22 -0.5
650,406 + CSW01_03245 0.22 +0.1
650,406 + CSW01_03245 0.22 -0.5
650,406 + CSW01_03245 0.22 +0.4
650,406 + CSW01_03245 0.22 +0.4
650,406 + CSW01_03245 0.22 +0.1
650,414 - CSW01_03245 0.23 +0.2
650,414 - CSW01_03245 0.23 -0.4
650,414 - CSW01_03245 0.23 -0.3
650,414 - CSW01_03245 0.23 -0.1
650,414 - CSW01_03245 0.23 +0.5
650,414 - CSW01_03245 0.23 +0.5
650,416 + CSW01_03245 0.23 +1.4
650,442 + CSW01_03245 0.25 -0.1
650,528 + CSW01_03245 0.34 -0.1
650,534 - CSW01_03245 0.35 +0.2
650,534 - CSW01_03245 0.35 +0.3
650,536 - CSW01_03245 0.35 -0.0
650,536 - CSW01_03245 0.35 +1.0
650,553 + CSW01_03245 0.37 -0.3
650,576 + CSW01_03245 0.39 -0.6
650,613 - CSW01_03245 0.43 -1.4
650,613 - CSW01_03245 0.43 -2.2
650,654 + CSW01_03245 0.47 +0.2
650,667 - CSW01_03245 0.48 +0.4
650,695 - CSW01_03245 0.51 -0.1
650,848 + CSW01_03245 0.66 +0.6
650,856 - CSW01_03245 0.67 -1.2
650,887 + CSW01_03245 0.70 +0.4
650,888 + CSW01_03245 0.70 +1.7
650,911 - CSW01_03245 0.72 +0.1
650,941 - CSW01_03245 0.76 +0.4
650,941 - CSW01_03245 0.76 +0.4
650,949 + CSW01_03245 0.76 -1.1
650,965 + CSW01_03245 0.78 -0.6
650,965 + CSW01_03245 0.78 -0.3
650,973 - CSW01_03245 0.79 +0.8
650,973 - CSW01_03245 0.79 +0.2
651,014 - CSW01_03245 0.83 -0.5
651,025 - CSW01_03245 0.84 +0.3

Or see this region's nucleotide sequence