Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02120

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02105 and CSW01_02110 overlap by 4 nucleotidesCSW01_02110 and CSW01_02115 overlap by 8 nucleotidesCSW01_02115 and CSW01_02120 are separated by 14 nucleotidesCSW01_02120 and CSW01_02125 are separated by 4 nucleotidesCSW01_02125 and CSW01_02130 overlap by 22 nucleotides CSW01_02105: CSW01_02105 - MSHA biogenesis protein MshI, at 424,037 to 425,476 _02105 CSW01_02110: CSW01_02110 - MSHA biogenesis protein MshJ, at 425,473 to 426,123 _02110 CSW01_02115: CSW01_02115 - MSHA biogenesis protein MshK, at 426,116 to 426,433 _02115 CSW01_02120: CSW01_02120 - pilus (MSHA type) biogenesis protein MshL, at 426,448 to 428,127 _02120 CSW01_02125: CSW01_02125 - MSHA biogenesis protein MshM, at 428,132 to 428,977 _02125 CSW01_02130: CSW01_02130 - MSHA biogenesis protein MshN, at 428,956 to 430,125 _02130 Position (kb) 426 427 428 429Strain fitness (log2 ratio) -2 -1 0 1 2 3at 425.547 kb on + strand, within CSW01_02110at 425.547 kb on + strand, within CSW01_02110at 425.555 kb on - strand, within CSW01_02110at 425.555 kb on - strand, within CSW01_02110at 425.555 kb on - strand, within CSW01_02110at 425.574 kb on - strand, within CSW01_02110at 425.585 kb on + strand, within CSW01_02110at 425.597 kb on - strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.723 kb on + strand, within CSW01_02110at 425.811 kb on - strand, within CSW01_02110at 425.875 kb on - strand, within CSW01_02110at 425.953 kb on + strand, within CSW01_02110at 425.989 kb on + strand, within CSW01_02110at 426.004 kb on - strand, within CSW01_02110at 426.063 kb on + strandat 426.071 kb on - strandat 426.081 kb on + strandat 426.082 kb on + strandat 426.096 kb on - strandat 426.098 kb on + strandat 426.098 kb on + strandat 426.098 kb on + strandat 426.128 kb on + strandat 426.131 kb on - strandat 426.155 kb on + strand, within CSW01_02115at 426.184 kb on - strand, within CSW01_02115at 426.188 kb on + strand, within CSW01_02115at 426.188 kb on + strand, within CSW01_02115at 426.206 kb on - strand, within CSW01_02115at 426.251 kb on + strand, within CSW01_02115at 426.258 kb on + strand, within CSW01_02115at 426.261 kb on - strand, within CSW01_02115at 426.293 kb on - strand, within CSW01_02115at 426.293 kb on - strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.319 kb on + strand, within CSW01_02115at 426.321 kb on + strand, within CSW01_02115at 426.322 kb on - strand, within CSW01_02115at 426.386 kb on + strand, within CSW01_02115at 426.386 kb on + strand, within CSW01_02115at 426.394 kb on - strand, within CSW01_02115at 426.394 kb on - strand, within CSW01_02115at 426.420 kb on + strandat 426.428 kb on - strandat 426.428 kb on - strandat 426.428 kb on - strandat 426.467 kb on + strandat 426.515 kb on - strandat 426.532 kb on + strandat 426.639 kb on + strand, within CSW01_02120at 426.693 kb on - strand, within CSW01_02120at 426.711 kb on + strand, within CSW01_02120at 426.718 kb on + strand, within CSW01_02120at 426.718 kb on + strand, within CSW01_02120at 426.718 kb on + strand, within CSW01_02120at 426.763 kb on + strand, within CSW01_02120at 426.779 kb on + strand, within CSW01_02120at 426.779 kb on + strand, within CSW01_02120at 426.779 kb on + strand, within CSW01_02120at 426.787 kb on - strand, within CSW01_02120at 426.796 kb on + strand, within CSW01_02120at 426.804 kb on - strand, within CSW01_02120at 426.824 kb on + strand, within CSW01_02120at 426.824 kb on + strand, within CSW01_02120at 426.824 kb on + strand, within CSW01_02120at 426.832 kb on - strand, within CSW01_02120at 426.832 kb on - strand, within CSW01_02120at 426.832 kb on - strand, within CSW01_02120at 426.929 kb on + strand, within CSW01_02120at 426.930 kb on - strand, within CSW01_02120at 427.036 kb on + strand, within CSW01_02120at 427.162 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.196 kb on + strand, within CSW01_02120at 427.196 kb on + strand, within CSW01_02120at 427.196 kb on + strand, within CSW01_02120at 427.203 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.318 kb on - strand, within CSW01_02120at 427.322 kb on + strand, within CSW01_02120at 427.344 kb on + strand, within CSW01_02120at 427.344 kb on + strand, within CSW01_02120at 427.345 kb on + strand, within CSW01_02120at 427.358 kb on + strand, within CSW01_02120at 427.392 kb on - strand, within CSW01_02120at 427.393 kb on - strand, within CSW01_02120at 427.399 kb on + strand, within CSW01_02120at 427.427 kb on + strand, within CSW01_02120at 427.442 kb on + strand, within CSW01_02120at 427.510 kb on - strand, within CSW01_02120at 427.541 kb on + strand, within CSW01_02120at 427.549 kb on + strand, within CSW01_02120at 427.612 kb on + strand, within CSW01_02120at 427.620 kb on - strand, within CSW01_02120at 427.652 kb on - strand, within CSW01_02120at 427.738 kb on + strand, within CSW01_02120at 427.748 kb on + strand, within CSW01_02120at 427.784 kb on - strand, within CSW01_02120at 427.784 kb on - strand, within CSW01_02120at 427.784 kb on - strand, within CSW01_02120at 427.892 kb on + strand, within CSW01_02120at 427.909 kb on + strand, within CSW01_02120at 427.920 kb on + strand, within CSW01_02120at 427.928 kb on - strand, within CSW01_02120at 427.936 kb on - strand, within CSW01_02120at 427.997 kb on + strandat 428.005 kb on - strandat 428.055 kb on + strandat 428.063 kb on - strandat 428.082 kb on - strandat 428.108 kb on - strandat 428.109 kb on - strandat 428.151 kb on + strandat 428.151 kb on + strandat 428.159 kb on - strandat 428.239 kb on - strand, within CSW01_02125at 428.279 kb on + strand, within CSW01_02125at 428.340 kb on + strand, within CSW01_02125at 428.364 kb on + strand, within CSW01_02125at 428.372 kb on - strand, within CSW01_02125at 428.385 kb on + strand, within CSW01_02125at 428.385 kb on + strand, within CSW01_02125at 428.392 kb on - strand, within CSW01_02125at 428.392 kb on - strand, within CSW01_02125at 428.392 kb on - strand, within CSW01_02125at 428.416 kb on - strand, within CSW01_02125at 428.431 kb on + strand, within CSW01_02125at 428.452 kb on + strand, within CSW01_02125at 428.452 kb on + strand, within CSW01_02125at 428.452 kb on - strand, within CSW01_02125at 428.467 kb on + strand, within CSW01_02125at 428.505 kb on - strand, within CSW01_02125at 428.506 kb on + strand, within CSW01_02125at 428.511 kb on + strand, within CSW01_02125at 428.534 kb on - strand, within CSW01_02125at 428.588 kb on - strand, within CSW01_02125at 428.588 kb on - strand, within CSW01_02125at 428.615 kb on + strand, within CSW01_02125at 428.764 kb on + strand, within CSW01_02125at 428.764 kb on + strand, within CSW01_02125at 428.764 kb on + strand, within CSW01_02125at 428.772 kb on - strand, within CSW01_02125at 428.772 kb on - strand, within CSW01_02125at 428.772 kb on - strand, within CSW01_02125at 428.809 kb on - strand, within CSW01_02125at 428.846 kb on + strand, within CSW01_02125at 428.854 kb on - strand, within CSW01_02125at 428.923 kb on - strandat 428.923 kb on - strandat 428.923 kb on - strandat 428.970 kb on + strandat 428.997 kb on + strandat 429.060 kb on + strandat 429.081 kb on + strand, within CSW01_02130at 429.088 kb on - strand, within CSW01_02130at 429.098 kb on + strand, within CSW01_02130at 429.098 kb on + strand, within CSW01_02130at 429.118 kb on - strand, within CSW01_02130

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
remove
425,547 + CSW01_02110 0.11 +0.6
425,547 + CSW01_02110 0.11 +0.8
425,555 - CSW01_02110 0.13 +1.5
425,555 - CSW01_02110 0.13 +1.1
425,555 - CSW01_02110 0.13 +0.9
425,574 - CSW01_02110 0.16 +2.9
425,585 + CSW01_02110 0.17 +0.6
425,597 - CSW01_02110 0.19 +0.0
425,600 + CSW01_02110 0.20 +1.0
425,600 + CSW01_02110 0.20 +2.2
425,600 + CSW01_02110 0.20 +0.9
425,600 + CSW01_02110 0.20 +1.0
425,600 + CSW01_02110 0.20 +0.6
425,600 + CSW01_02110 0.20 +0.9
425,600 + CSW01_02110 0.20 +2.0
425,600 + CSW01_02110 0.20 +1.0
425,600 + CSW01_02110 0.20 +1.1
425,608 - CSW01_02110 0.21 +0.0
425,608 - CSW01_02110 0.21 +1.1
425,608 - CSW01_02110 0.21 +0.4
425,608 - CSW01_02110 0.21 +1.1
425,608 - CSW01_02110 0.21 +1.1
425,723 + CSW01_02110 0.38 +0.9
425,811 - CSW01_02110 0.52 +0.1
425,875 - CSW01_02110 0.62 -0.6
425,953 + CSW01_02110 0.74 +0.9
425,989 + CSW01_02110 0.79 +0.7
426,004 - CSW01_02110 0.82 +1.0
426,063 + +0.6
426,071 - +0.6
426,081 + +0.2
426,082 + +0.9
426,096 - +0.7
426,098 + +0.7
426,098 + +0.9
426,098 + +0.1
426,128 + +1.0
426,131 - +0.6
426,155 + CSW01_02115 0.12 +1.4
426,184 - CSW01_02115 0.21 +1.1
426,188 + CSW01_02115 0.23 +2.0
426,188 + CSW01_02115 0.23 +1.5
426,206 - CSW01_02115 0.28 -0.0
426,251 + CSW01_02115 0.42 +1.0
426,258 + CSW01_02115 0.45 +0.1
426,261 - CSW01_02115 0.46 +0.8
426,293 - CSW01_02115 0.56 +1.4
426,293 - CSW01_02115 0.56 +1.2
426,314 + CSW01_02115 0.62 +1.2
426,314 + CSW01_02115 0.62 +0.7
426,314 + CSW01_02115 0.62 +0.5
426,314 + CSW01_02115 0.62 +1.1
426,319 + CSW01_02115 0.64 +1.1
426,321 + CSW01_02115 0.64 +1.0
426,322 - CSW01_02115 0.65 +0.8
426,386 + CSW01_02115 0.85 +0.9
426,386 + CSW01_02115 0.85 +0.7
426,394 - CSW01_02115 0.87 -1.8
426,394 - CSW01_02115 0.87 +0.6
426,420 + -0.7
426,428 - +2.0
426,428 - -0.1
426,428 - +0.5
426,467 + +1.3
426,515 - +0.6
426,532 + +0.5
426,639 + CSW01_02120 0.11 +0.8
426,693 - CSW01_02120 0.15 +0.0
426,711 + CSW01_02120 0.16 +0.6
426,718 + CSW01_02120 0.16 +0.9
426,718 + CSW01_02120 0.16 +0.5
426,718 + CSW01_02120 0.16 +0.8
426,763 + CSW01_02120 0.19 +1.0
426,779 + CSW01_02120 0.20 +0.8
426,779 + CSW01_02120 0.20 +0.8
426,779 + CSW01_02120 0.20 +0.3
426,787 - CSW01_02120 0.20 +0.9
426,796 + CSW01_02120 0.21 +0.8
426,804 - CSW01_02120 0.21 +0.9
426,824 + CSW01_02120 0.22 +0.4
426,824 + CSW01_02120 0.22 +0.2
426,824 + CSW01_02120 0.22 +0.4
426,832 - CSW01_02120 0.23 +3.6
426,832 - CSW01_02120 0.23 +2.2
426,832 - CSW01_02120 0.23 +0.9
426,929 + CSW01_02120 0.29 +0.6
426,930 - CSW01_02120 0.29 +0.8
427,036 + CSW01_02120 0.35 +1.1
427,162 + CSW01_02120 0.42 +0.9
427,195 + CSW01_02120 0.44 +1.0
427,195 + CSW01_02120 0.44 +0.1
427,195 + CSW01_02120 0.44 +1.2
427,195 + CSW01_02120 0.44 +1.4
427,195 + CSW01_02120 0.44 +0.6
427,195 + CSW01_02120 0.44 +0.3
427,195 + CSW01_02120 0.44 +1.1
427,196 + CSW01_02120 0.45 +1.0
427,196 + CSW01_02120 0.45 +0.9
427,196 + CSW01_02120 0.45 +0.9
427,203 - CSW01_02120 0.45 +0.4
427,204 - CSW01_02120 0.45 +1.0
427,204 - CSW01_02120 0.45 +0.5
427,204 - CSW01_02120 0.45 +1.6
427,204 - CSW01_02120 0.45 +1.0
427,204 - CSW01_02120 0.45 +0.0
427,318 - CSW01_02120 0.52 +0.7
427,322 + CSW01_02120 0.52 +0.7
427,344 + CSW01_02120 0.53 -0.1
427,344 + CSW01_02120 0.53 +0.7
427,345 + CSW01_02120 0.53 +0.7
427,358 + CSW01_02120 0.54 +1.2
427,392 - CSW01_02120 0.56 +0.8
427,393 - CSW01_02120 0.56 +0.7
427,399 + CSW01_02120 0.57 +0.9
427,427 + CSW01_02120 0.58 -0.2
427,442 + CSW01_02120 0.59 +0.3
427,510 - CSW01_02120 0.63 +0.3
427,541 + CSW01_02120 0.65 +1.3
427,549 + CSW01_02120 0.66 +2.1
427,612 + CSW01_02120 0.69 +0.7
427,620 - CSW01_02120 0.70 +1.9
427,652 - CSW01_02120 0.72 +0.8
427,738 + CSW01_02120 0.77 +1.2
427,748 + CSW01_02120 0.77 +1.3
427,784 - CSW01_02120 0.80 +0.6
427,784 - CSW01_02120 0.80 +0.9
427,784 - CSW01_02120 0.80 +0.6
427,892 + CSW01_02120 0.86 +0.8
427,909 + CSW01_02120 0.87 +0.7
427,920 + CSW01_02120 0.88 +0.7
427,928 - CSW01_02120 0.88 +0.4
427,936 - CSW01_02120 0.89 +0.8
427,997 + +0.6
428,005 - +0.9
428,055 + +1.2
428,063 - +1.5
428,082 - +0.3
428,108 - +0.5
428,109 - +0.4
428,151 + +0.3
428,151 + +0.2
428,159 - +0.6
428,239 - CSW01_02125 0.13 +0.9
428,279 + CSW01_02125 0.17 +1.7
428,340 + CSW01_02125 0.25 +0.4
428,364 + CSW01_02125 0.27 -0.7
428,372 - CSW01_02125 0.28 +0.8
428,385 + CSW01_02125 0.30 +1.2
428,385 + CSW01_02125 0.30 +0.9
428,392 - CSW01_02125 0.31 +0.5
428,392 - CSW01_02125 0.31 +0.1
428,392 - CSW01_02125 0.31 +0.7
428,416 - CSW01_02125 0.34 +0.6
428,431 + CSW01_02125 0.35 -0.0
428,452 + CSW01_02125 0.38 +0.4
428,452 + CSW01_02125 0.38 -0.5
428,452 - CSW01_02125 0.38 +1.0
428,467 + CSW01_02125 0.40 +0.5
428,505 - CSW01_02125 0.44 +1.0
428,506 + CSW01_02125 0.44 +0.6
428,511 + CSW01_02125 0.45 +1.3
428,534 - CSW01_02125 0.48 +1.2
428,588 - CSW01_02125 0.54 +0.4
428,588 - CSW01_02125 0.54 +1.1
428,615 + CSW01_02125 0.57 -0.2
428,764 + CSW01_02125 0.75 +0.1
428,764 + CSW01_02125 0.75 +0.2
428,764 + CSW01_02125 0.75 +0.7
428,772 - CSW01_02125 0.76 +1.4
428,772 - CSW01_02125 0.76 +1.2
428,772 - CSW01_02125 0.76 +0.4
428,809 - CSW01_02125 0.80 +0.2
428,846 + CSW01_02125 0.84 +0.4
428,854 - CSW01_02125 0.85 +0.9
428,923 - +0.3
428,923 - +0.7
428,923 - +0.9
428,970 + +0.3
428,997 + +1.3
429,060 + +1.0
429,081 + CSW01_02130 0.11 +2.0
429,088 - CSW01_02130 0.11 +1.3
429,098 + CSW01_02130 0.12 +0.9
429,098 + CSW01_02130 0.12 -0.8
429,118 - CSW01_02130 0.14 +1.1

Or see this region's nucleotide sequence