Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01125

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01120 and CSW01_01125 are separated by 85 nucleotidesCSW01_01125 and CSW01_01130 are separated by 10 nucleotidesCSW01_01130 and CSW01_01135 overlap by 4 nucleotides CSW01_01120: CSW01_01120 - orotate phosphoribosyltransferase, at 218,671 to 219,312 _01120 CSW01_01125: CSW01_01125 - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 219,398 to 220,375 _01125 CSW01_01130: CSW01_01130 - lipid A biosynthesis lauroyl acyltransferase, at 220,386 to 221,342 _01130 CSW01_01135: CSW01_01135 - nucleoid occlusion factor SlmA, at 221,339 to 221,929 _01135 Position (kb) 219 220 221Strain fitness (log2 ratio) -2 -1 0 1 2 3at 218.412 kb on + strandat 218.431 kb on - strandat 218.468 kb on + strandat 218.510 kb on + strandat 218.517 kb on - strandat 218.517 kb on - strandat 218.569 kb on - strandat 218.571 kb on + strandat 218.576 kb on - strandat 218.654 kb on - strandat 218.698 kb on + strandat 218.754 kb on + strand, within CSW01_01120at 218.777 kb on + strand, within CSW01_01120at 218.777 kb on + strand, within CSW01_01120at 218.777 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.836 kb on + strand, within CSW01_01120at 218.858 kb on + strand, within CSW01_01120at 218.879 kb on - strand, within CSW01_01120at 218.881 kb on + strand, within CSW01_01120at 218.943 kb on + strand, within CSW01_01120at 218.950 kb on + strand, within CSW01_01120at 218.951 kb on - strand, within CSW01_01120at 218.951 kb on - strand, within CSW01_01120at 218.951 kb on - strand, within CSW01_01120at 218.957 kb on + strand, within CSW01_01120at 218.973 kb on + strand, within CSW01_01120at 218.973 kb on + strand, within CSW01_01120at 219.015 kb on + strand, within CSW01_01120at 219.074 kb on + strand, within CSW01_01120at 219.083 kb on + strand, within CSW01_01120at 219.106 kb on + strand, within CSW01_01120at 219.106 kb on + strand, within CSW01_01120at 219.187 kb on + strand, within CSW01_01120at 219.202 kb on + strand, within CSW01_01120at 219.239 kb on + strand, within CSW01_01120at 219.239 kb on + strand, within CSW01_01120at 219.247 kb on - strand, within CSW01_01120at 219.247 kb on - strand, within CSW01_01120at 219.260 kb on + strandat 219.268 kb on - strandat 219.276 kb on - strandat 219.285 kb on + strandat 219.290 kb on + strandat 219.290 kb on + strandat 219.298 kb on - strandat 219.300 kb on + strandat 219.308 kb on - strandat 219.453 kb on + strandat 219.478 kb on - strandat 219.495 kb on + strandat 219.503 kb on - strand, within CSW01_01125at 219.503 kb on - strand, within CSW01_01125at 219.503 kb on - strand, within CSW01_01125at 219.503 kb on - strand, within CSW01_01125at 219.547 kb on - strand, within CSW01_01125at 219.571 kb on - strand, within CSW01_01125at 219.589 kb on + strand, within CSW01_01125at 219.597 kb on - strand, within CSW01_01125at 219.631 kb on - strand, within CSW01_01125at 219.650 kb on - strand, within CSW01_01125at 219.650 kb on - strand, within CSW01_01125at 219.653 kb on - strand, within CSW01_01125at 219.665 kb on + strand, within CSW01_01125at 219.679 kb on - strand, within CSW01_01125at 219.727 kb on - strand, within CSW01_01125at 219.753 kb on - strand, within CSW01_01125at 219.797 kb on - strand, within CSW01_01125at 219.875 kb on - strand, within CSW01_01125at 219.906 kb on - strand, within CSW01_01125at 219.942 kb on + strand, within CSW01_01125at 219.942 kb on + strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.958 kb on - strand, within CSW01_01125at 219.983 kb on + strand, within CSW01_01125at 220.050 kb on + strand, within CSW01_01125at 220.052 kb on + strand, within CSW01_01125at 220.065 kb on + strand, within CSW01_01125at 220.082 kb on - strand, within CSW01_01125at 220.119 kb on - strand, within CSW01_01125at 220.158 kb on + strand, within CSW01_01125at 220.211 kb on + strand, within CSW01_01125at 220.219 kb on - strand, within CSW01_01125at 220.256 kb on + strand, within CSW01_01125at 220.264 kb on - strand, within CSW01_01125at 220.264 kb on - strand, within CSW01_01125at 220.264 kb on - strand, within CSW01_01125at 220.417 kb on - strandat 221.332 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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218,412 + +0.3
218,431 - +0.3
218,468 + -0.8
218,510 + +0.3
218,517 - -0.2
218,517 - -0.1
218,569 - +1.7
218,571 + +0.0
218,576 - +1.6
218,654 - +1.6
218,698 + +0.0
218,754 + CSW01_01120 0.13 -0.4
218,777 + CSW01_01120 0.17 -0.1
218,777 + CSW01_01120 0.17 +0.0
218,777 + CSW01_01120 0.17 +1.1
218,787 + CSW01_01120 0.18 -0.5
218,787 + CSW01_01120 0.18 -1.0
218,787 + CSW01_01120 0.18 -0.4
218,787 + CSW01_01120 0.18 +0.2
218,787 + CSW01_01120 0.18 +0.2
218,787 + CSW01_01120 0.18 -0.2
218,787 + CSW01_01120 0.18 +0.2
218,787 + CSW01_01120 0.18 +0.0
218,787 + CSW01_01120 0.18 -0.4
218,787 + CSW01_01120 0.18 +0.2
218,787 + CSW01_01120 0.18 -0.6
218,787 + CSW01_01120 0.18 -0.2
218,787 + CSW01_01120 0.18 -0.8
218,787 + CSW01_01120 0.18 -0.2
218,787 + CSW01_01120 0.18 -0.2
218,787 + CSW01_01120 0.18 +0.4
218,787 + CSW01_01120 0.18 +1.1
218,787 + CSW01_01120 0.18 -0.7
218,787 + CSW01_01120 0.18 +0.6
218,787 + CSW01_01120 0.18 +0.1
218,787 + CSW01_01120 0.18 +0.4
218,787 + CSW01_01120 0.18 -1.0
218,787 + CSW01_01120 0.18 -1.3
218,787 + CSW01_01120 0.18 +0.0
218,787 + CSW01_01120 0.18 +1.3
218,787 + CSW01_01120 0.18 -0.4
218,787 + CSW01_01120 0.18 -0.3
218,787 + CSW01_01120 0.18 +0.2
218,787 + CSW01_01120 0.18 +0.1
218,787 + CSW01_01120 0.18 -0.7
218,787 + CSW01_01120 0.18 -0.1
218,795 - CSW01_01120 0.19 -0.7
218,795 - CSW01_01120 0.19 +0.5
218,795 - CSW01_01120 0.19 -0.2
218,795 - CSW01_01120 0.19 +1.3
218,795 - CSW01_01120 0.19 +0.5
218,795 - CSW01_01120 0.19 +0.1
218,795 - CSW01_01120 0.19 +0.3
218,795 - CSW01_01120 0.19 +0.4
218,795 - CSW01_01120 0.19 -0.5
218,795 - CSW01_01120 0.19 -0.8
218,795 - CSW01_01120 0.19 -0.1
218,795 - CSW01_01120 0.19 -0.7
218,795 - CSW01_01120 0.19 +0.0
218,795 - CSW01_01120 0.19 -0.1
218,795 - CSW01_01120 0.19 -0.2
218,795 - CSW01_01120 0.19 -0.1
218,836 + CSW01_01120 0.26 -0.0
218,858 + CSW01_01120 0.29 +0.1
218,879 - CSW01_01120 0.32 -0.0
218,881 + CSW01_01120 0.33 +0.6
218,943 + CSW01_01120 0.42 -0.1
218,950 + CSW01_01120 0.43 -0.1
218,951 - CSW01_01120 0.44 -0.3
218,951 - CSW01_01120 0.44 +0.7
218,951 - CSW01_01120 0.44 +0.6
218,957 + CSW01_01120 0.45 +0.2
218,973 + CSW01_01120 0.47 +0.8
218,973 + CSW01_01120 0.47 +0.0
219,015 + CSW01_01120 0.54 -0.2
219,074 + CSW01_01120 0.63 +0.1
219,083 + CSW01_01120 0.64 +1.6
219,106 + CSW01_01120 0.68 -1.0
219,106 + CSW01_01120 0.68 -1.3
219,187 + CSW01_01120 0.80 +0.1
219,202 + CSW01_01120 0.83 -0.4
219,239 + CSW01_01120 0.88 -0.1
219,239 + CSW01_01120 0.88 -0.1
219,247 - CSW01_01120 0.90 +0.2
219,247 - CSW01_01120 0.90 +0.2
219,260 + -0.2
219,268 - +0.2
219,276 - +0.9
219,285 + -0.7
219,290 + +0.3
219,290 + -0.2
219,298 - +0.7
219,300 + +0.7
219,308 - -0.4
219,453 + +0.2
219,478 - -0.4
219,495 + -0.2
219,503 - CSW01_01125 0.11 +0.1
219,503 - CSW01_01125 0.11 +2.0
219,503 - CSW01_01125 0.11 +0.4
219,503 - CSW01_01125 0.11 -0.2
219,547 - CSW01_01125 0.15 -1.1
219,571 - CSW01_01125 0.18 -0.5
219,589 + CSW01_01125 0.20 -0.2
219,597 - CSW01_01125 0.20 -0.0
219,631 - CSW01_01125 0.24 +0.9
219,650 - CSW01_01125 0.26 +2.2
219,650 - CSW01_01125 0.26 +0.6
219,653 - CSW01_01125 0.26 +0.0
219,665 + CSW01_01125 0.27 -0.4
219,679 - CSW01_01125 0.29 +0.7
219,727 - CSW01_01125 0.34 +0.0
219,753 - CSW01_01125 0.36 +2.2
219,797 - CSW01_01125 0.41 -0.5
219,875 - CSW01_01125 0.49 -0.5
219,906 - CSW01_01125 0.52 -0.4
219,942 + CSW01_01125 0.56 +0.3
219,942 + CSW01_01125 0.56 +0.2
219,950 - CSW01_01125 0.56 +0.2
219,950 - CSW01_01125 0.56 -1.8
219,950 - CSW01_01125 0.56 -0.2
219,950 - CSW01_01125 0.56 +3.0
219,950 - CSW01_01125 0.56 -1.0
219,958 - CSW01_01125 0.57 -0.4
219,983 + CSW01_01125 0.60 +0.3
220,050 + CSW01_01125 0.67 -1.6
220,052 + CSW01_01125 0.67 -0.1
220,065 + CSW01_01125 0.68 -1.0
220,082 - CSW01_01125 0.70 +1.7
220,119 - CSW01_01125 0.74 -0.8
220,158 + CSW01_01125 0.78 -0.6
220,211 + CSW01_01125 0.83 -0.4
220,219 - CSW01_01125 0.84 +0.7
220,256 + CSW01_01125 0.88 +0.2
220,264 - CSW01_01125 0.89 -1.3
220,264 - CSW01_01125 0.89 -0.2
220,264 - CSW01_01125 0.89 +0.3
220,417 - -1.3
221,332 + -1.5
221,340 + +0.2
221,340 + -1.6
221,340 + -2.5
221,340 + -1.4
221,340 + +0.1
221,340 + +0.3
221,340 + +0.8
221,340 + -0.2
221,340 + -1.6
221,348 - +0.3
221,348 - -0.1
221,348 - +0.7
221,348 - +0.2
221,348 - +0.4
221,348 - +0.1
221,348 - +0.4
221,348 - +0.1
221,348 - +0.2
221,348 - -0.2
221,348 - +0.3
221,348 - +0.3
221,360 - +0.3

Or see this region's nucleotide sequence