Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00930

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00925 and CSW01_00930 are separated by 174 nucleotidesCSW01_00930 and CSW01_00935 are separated by 252 nucleotides CSW01_00925: CSW01_00925 - ABC transporter permease, at 173,031 to 173,969 _00925 CSW01_00930: CSW01_00930 - SPOR domain-containing protein, at 174,144 to 175,091 _00930 CSW01_00935: CSW01_00935 - deoxycytidylate deaminase, at 175,344 to 176,942 _00935 Position (kb) 174 175 176Strain fitness (log2 ratio) -2 -1 0 1 2at 173.191 kb on - strand, within CSW01_00925at 173.228 kb on + strand, within CSW01_00925at 173.228 kb on + strand, within CSW01_00925at 173.228 kb on + strand, within CSW01_00925at 173.228 kb on + strand, within CSW01_00925at 173.229 kb on + strand, within CSW01_00925at 173.275 kb on + strand, within CSW01_00925at 173.313 kb on + strand, within CSW01_00925at 173.359 kb on + strand, within CSW01_00925at 173.367 kb on - strand, within CSW01_00925at 173.367 kb on - strand, within CSW01_00925at 173.367 kb on - strand, within CSW01_00925at 173.367 kb on - strand, within CSW01_00925at 173.448 kb on + strand, within CSW01_00925at 173.643 kb on - strand, within CSW01_00925at 173.659 kb on + strand, within CSW01_00925at 173.667 kb on - strand, within CSW01_00925at 173.686 kb on + strand, within CSW01_00925at 173.763 kb on - strand, within CSW01_00925at 173.781 kb on + strand, within CSW01_00925at 173.789 kb on - strand, within CSW01_00925at 173.816 kb on - strand, within CSW01_00925at 173.827 kb on + strand, within CSW01_00925at 173.964 kb on + strandat 173.964 kb on + strandat 173.964 kb on + strandat 173.972 kb on - strandat 173.972 kb on - strandat 174.125 kb on + strandat 174.125 kb on + strandat 174.125 kb on + strandat 174.125 kb on + strandat 174.125 kb on + strandat 174.125 kb on + strandat 174.125 kb on + strandat 174.133 kb on - strandat 174.133 kb on - strandat 174.133 kb on - strandat 174.133 kb on - strandat 174.133 kb on - strandat 174.133 kb on - strandat 174.133 kb on - strandat 174.154 kb on + strandat 174.163 kb on + strandat 174.219 kb on + strandat 174.254 kb on + strand, within CSW01_00930at 174.289 kb on + strand, within CSW01_00930at 174.407 kb on - strand, within CSW01_00930at 174.425 kb on + strand, within CSW01_00930at 174.427 kb on - strand, within CSW01_00930at 174.431 kb on + strand, within CSW01_00930at 174.439 kb on - strand, within CSW01_00930at 174.448 kb on + strand, within CSW01_00930at 174.546 kb on + strand, within CSW01_00930at 174.639 kb on + strand, within CSW01_00930at 174.729 kb on + strand, within CSW01_00930at 174.739 kb on + strand, within CSW01_00930at 174.739 kb on + strand, within CSW01_00930at 174.739 kb on + strand, within CSW01_00930at 174.739 kb on + strand, within CSW01_00930at 174.739 kb on - strand, within CSW01_00930at 174.740 kb on + strand, within CSW01_00930at 174.740 kb on + strand, within CSW01_00930at 174.740 kb on + strand, within CSW01_00930at 174.741 kb on + strand, within CSW01_00930at 174.747 kb on - strand, within CSW01_00930at 174.747 kb on - strand, within CSW01_00930at 174.747 kb on - strand, within CSW01_00930at 174.747 kb on - strand, within CSW01_00930at 174.748 kb on - strand, within CSW01_00930at 174.812 kb on + strand, within CSW01_00930at 174.818 kb on - strand, within CSW01_00930at 174.818 kb on - strand, within CSW01_00930at 174.820 kb on - strand, within CSW01_00930at 174.839 kb on + strand, within CSW01_00930at 174.847 kb on - strand, within CSW01_00930at 174.888 kb on + strand, within CSW01_00930at 174.909 kb on - strand, within CSW01_00930at 174.930 kb on + strand, within CSW01_00930at 174.975 kb on + strand, within CSW01_00930at 175.003 kb on + strandat 175.021 kb on - strandat 175.055 kb on + strandat 175.062 kb on + strandat 175.065 kb on - strandat 175.067 kb on + strandat 175.067 kb on + strandat 175.071 kb on + strandat 175.075 kb on - strandat 175.075 kb on - strandat 175.075 kb on - strandat 175.076 kb on + strandat 175.170 kb on - strandat 175.175 kb on - strandat 175.203 kb on - strandat 175.209 kb on - strandat 175.270 kb on - strandat 175.359 kb on + strandat 175.359 kb on + strandat 175.361 kb on + strandat 175.369 kb on - strandat 175.527 kb on + strand, within CSW01_00935at 175.542 kb on + strand, within CSW01_00935at 175.550 kb on - strand, within CSW01_00935at 175.566 kb on - strand, within CSW01_00935at 175.566 kb on - strand, within CSW01_00935at 175.689 kb on + strand, within CSW01_00935at 175.692 kb on + strand, within CSW01_00935at 175.710 kb on - strand, within CSW01_00935at 175.710 kb on - strand, within CSW01_00935at 175.712 kb on - strand, within CSW01_00935at 175.712 kb on - strand, within CSW01_00935at 175.712 kb on - strand, within CSW01_00935at 175.713 kb on + strand, within CSW01_00935at 175.726 kb on + strand, within CSW01_00935at 175.750 kb on - strand, within CSW01_00935at 175.775 kb on - strand, within CSW01_00935at 175.794 kb on + strand, within CSW01_00935at 175.802 kb on - strand, within CSW01_00935at 175.871 kb on + strand, within CSW01_00935at 175.879 kb on - strand, within CSW01_00935at 175.879 kb on - strand, within CSW01_00935at 175.879 kb on - strand, within CSW01_00935at 175.879 kb on - strand, within CSW01_00935at 175.879 kb on - strand, within CSW01_00935at 175.935 kb on - strand, within CSW01_00935at 175.960 kb on + strand, within CSW01_00935at 175.960 kb on + strand, within CSW01_00935at 175.968 kb on - strand, within CSW01_00935at 175.968 kb on - strand, within CSW01_00935at 175.981 kb on + strand, within CSW01_00935at 175.987 kb on - strand, within CSW01_00935at 175.989 kb on - strand, within CSW01_00935at 176.009 kb on + strand, within CSW01_00935at 176.009 kb on + strand, within CSW01_00935at 176.016 kb on + strand, within CSW01_00935at 176.024 kb on + strand, within CSW01_00935at 176.024 kb on - strand, within CSW01_00935at 176.024 kb on - strand, within CSW01_00935at 176.024 kb on - strand, within CSW01_00935at 176.041 kb on + strand, within CSW01_00935at 176.041 kb on + strand, within CSW01_00935at 176.041 kb on + strand, within CSW01_00935at 176.042 kb on + strand, within CSW01_00935at 176.049 kb on - strand, within CSW01_00935at 176.049 kb on - strand, within CSW01_00935at 176.050 kb on - strand, within CSW01_00935at 176.074 kb on - strand, within CSW01_00935at 176.074 kb on - strand, within CSW01_00935

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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173,191 - CSW01_00925 0.17 -1.1
173,228 + CSW01_00925 0.21 -0.5
173,228 + CSW01_00925 0.21 -2.6
173,228 + CSW01_00925 0.21 +0.4
173,228 + CSW01_00925 0.21 +0.2
173,229 + CSW01_00925 0.21 -0.3
173,275 + CSW01_00925 0.26 -0.4
173,313 + CSW01_00925 0.30 -0.5
173,359 + CSW01_00925 0.35 -0.1
173,367 - CSW01_00925 0.36 +0.3
173,367 - CSW01_00925 0.36 -0.8
173,367 - CSW01_00925 0.36 +0.1
173,367 - CSW01_00925 0.36 -0.5
173,448 + CSW01_00925 0.44 -0.9
173,643 - CSW01_00925 0.65 +0.2
173,659 + CSW01_00925 0.67 +0.7
173,667 - CSW01_00925 0.68 +0.1
173,686 + CSW01_00925 0.70 -1.2
173,763 - CSW01_00925 0.78 -0.0
173,781 + CSW01_00925 0.80 +0.3
173,789 - CSW01_00925 0.81 +1.1
173,816 - CSW01_00925 0.84 -0.3
173,827 + CSW01_00925 0.85 -0.5
173,964 + +0.2
173,964 + -0.0
173,964 + +0.5
173,972 - +0.5
173,972 - +0.0
174,125 + -0.2
174,125 + -0.3
174,125 + -0.6
174,125 + +0.4
174,125 + +0.3
174,125 + -0.1
174,125 + +0.2
174,133 - -0.3
174,133 - +0.5
174,133 - -0.7
174,133 - +0.8
174,133 - -0.1
174,133 - +0.6
174,133 - +1.1
174,154 + -0.1
174,163 + +0.1
174,219 + -0.1
174,254 + CSW01_00930 0.12 -0.4
174,289 + CSW01_00930 0.15 +0.0
174,407 - CSW01_00930 0.28 +0.3
174,425 + CSW01_00930 0.30 +0.3
174,427 - CSW01_00930 0.30 +0.1
174,431 + CSW01_00930 0.30 +0.4
174,439 - CSW01_00930 0.31 -0.1
174,448 + CSW01_00930 0.32 -0.2
174,546 + CSW01_00930 0.42 -0.3
174,639 + CSW01_00930 0.52 -1.7
174,729 + CSW01_00930 0.62 +0.8
174,739 + CSW01_00930 0.63 +1.5
174,739 + CSW01_00930 0.63 -0.1
174,739 + CSW01_00930 0.63 +0.6
174,739 + CSW01_00930 0.63 +0.2
174,739 - CSW01_00930 0.63 -0.1
174,740 + CSW01_00930 0.63 +0.5
174,740 + CSW01_00930 0.63 +0.1
174,740 + CSW01_00930 0.63 -0.3
174,741 + CSW01_00930 0.63 +1.1
174,747 - CSW01_00930 0.64 -0.8
174,747 - CSW01_00930 0.64 +1.3
174,747 - CSW01_00930 0.64 -0.7
174,747 - CSW01_00930 0.64 +0.4
174,748 - CSW01_00930 0.64 -0.3
174,812 + CSW01_00930 0.70 +0.4
174,818 - CSW01_00930 0.71 +0.2
174,818 - CSW01_00930 0.71 -0.3
174,820 - CSW01_00930 0.71 -0.3
174,839 + CSW01_00930 0.73 -0.3
174,847 - CSW01_00930 0.74 -1.1
174,888 + CSW01_00930 0.78 -1.0
174,909 - CSW01_00930 0.81 +0.1
174,930 + CSW01_00930 0.83 +0.0
174,975 + CSW01_00930 0.88 +1.0
175,003 + -0.1
175,021 - -0.8
175,055 + +0.6
175,062 + -0.6
175,065 - -0.5
175,067 + +0.3
175,067 + +0.4
175,071 + +0.8
175,075 - +0.3
175,075 - +0.9
175,075 - +0.1
175,076 + +0.2
175,170 - +0.0
175,175 - +1.2
175,203 - +0.2
175,209 - +1.6
175,270 - +0.5
175,359 + -0.6
175,359 + -0.1
175,361 + -0.3
175,369 - +0.6
175,527 + CSW01_00935 0.11 +0.3
175,542 + CSW01_00935 0.12 +0.3
175,550 - CSW01_00935 0.13 -0.4
175,566 - CSW01_00935 0.14 -0.6
175,566 - CSW01_00935 0.14 +0.7
175,689 + CSW01_00935 0.22 +1.8
175,692 + CSW01_00935 0.22 -0.5
175,710 - CSW01_00935 0.23 +0.5
175,710 - CSW01_00935 0.23 +0.0
175,712 - CSW01_00935 0.23 +0.0
175,712 - CSW01_00935 0.23 +1.7
175,712 - CSW01_00935 0.23 -0.3
175,713 + CSW01_00935 0.23 +1.2
175,726 + CSW01_00935 0.24 +0.2
175,750 - CSW01_00935 0.25 +0.1
175,775 - CSW01_00935 0.27 -0.3
175,794 + CSW01_00935 0.28 -0.1
175,802 - CSW01_00935 0.29 +0.0
175,871 + CSW01_00935 0.33 -0.3
175,879 - CSW01_00935 0.33 -0.6
175,879 - CSW01_00935 0.33 +0.5
175,879 - CSW01_00935 0.33 +0.2
175,879 - CSW01_00935 0.33 +0.4
175,879 - CSW01_00935 0.33 +0.1
175,935 - CSW01_00935 0.37 -0.1
175,960 + CSW01_00935 0.39 +1.2
175,960 + CSW01_00935 0.39 -0.1
175,968 - CSW01_00935 0.39 -0.2
175,968 - CSW01_00935 0.39 -0.3
175,981 + CSW01_00935 0.40 -1.0
175,987 - CSW01_00935 0.40 +0.1
175,989 - CSW01_00935 0.40 +0.5
176,009 + CSW01_00935 0.42 -1.0
176,009 + CSW01_00935 0.42 -0.3
176,016 + CSW01_00935 0.42 +0.2
176,024 + CSW01_00935 0.43 +1.2
176,024 - CSW01_00935 0.43 -0.2
176,024 - CSW01_00935 0.43 -0.0
176,024 - CSW01_00935 0.43 -0.6
176,041 + CSW01_00935 0.44 +0.1
176,041 + CSW01_00935 0.44 -1.3
176,041 + CSW01_00935 0.44 -0.7
176,042 + CSW01_00935 0.44 -0.3
176,049 - CSW01_00935 0.44 -0.2
176,049 - CSW01_00935 0.44 +0.0
176,050 - CSW01_00935 0.44 -1.0
176,074 - CSW01_00935 0.46 -1.4
176,074 - CSW01_00935 0.46 +0.4

Or see this region's nucleotide sequence