Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00855

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00850 and CSW01_00855 are separated by 11 nucleotidesCSW01_00855 and CSW01_00860 are separated by 18 nucleotidesCSW01_00860 and CSW01_00865 are separated by 145 nucleotides CSW01_00850: CSW01_00850 - multidrug resistance protein, at 159,420 to 162,530 _00850 CSW01_00855: CSW01_00855 - MexH family multidrug efflux RND transporter periplasmic adaptor subunit, at 162,542 to 163,648 _00855 CSW01_00860: CSW01_00860 - TetR/AcrR family transcriptional regulator, at 163,667 to 164,263 _00860 CSW01_00865: CSW01_00865 - DNA helicase Rep, at 164,409 to 166,424 _00865 Position (kb) 162 163 164Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 161.561 kb on + strand, within CSW01_00850at 161.604 kb on + strand, within CSW01_00850at 161.657 kb on + strand, within CSW01_00850at 161.713 kb on - strand, within CSW01_00850at 161.732 kb on - strand, within CSW01_00850at 161.772 kb on + strand, within CSW01_00850at 161.799 kb on - strand, within CSW01_00850at 161.806 kb on - strand, within CSW01_00850at 161.824 kb on + strand, within CSW01_00850at 161.824 kb on + strand, within CSW01_00850at 161.832 kb on - strand, within CSW01_00850at 161.884 kb on + strand, within CSW01_00850at 161.939 kb on + strand, within CSW01_00850at 161.939 kb on + strand, within CSW01_00850at 161.963 kb on + strand, within CSW01_00850at 162.003 kb on - strand, within CSW01_00850at 162.029 kb on - strand, within CSW01_00850at 162.029 kb on - strand, within CSW01_00850at 162.038 kb on + strand, within CSW01_00850at 162.039 kb on - strand, within CSW01_00850at 162.039 kb on - strand, within CSW01_00850at 162.039 kb on - strand, within CSW01_00850at 162.039 kb on - strand, within CSW01_00850at 162.039 kb on - strand, within CSW01_00850at 162.039 kb on - strand, within CSW01_00850at 162.055 kb on + strand, within CSW01_00850at 162.094 kb on + strand, within CSW01_00850at 162.106 kb on + strand, within CSW01_00850at 162.134 kb on - strand, within CSW01_00850at 162.158 kb on - strand, within CSW01_00850at 162.166 kb on + strand, within CSW01_00850at 162.190 kb on + strand, within CSW01_00850at 162.190 kb on + strand, within CSW01_00850at 162.190 kb on + strand, within CSW01_00850at 162.196 kb on + strand, within CSW01_00850at 162.204 kb on - strand, within CSW01_00850at 162.231 kb on - strandat 162.231 kb on - strandat 162.231 kb on - strandat 162.233 kb on - strandat 162.262 kb on - strandat 162.278 kb on - strandat 162.278 kb on - strandat 162.290 kb on - strandat 162.359 kb on + strandat 162.398 kb on + strandat 162.515 kb on + strandat 162.555 kb on - strandat 162.555 kb on - strandat 162.555 kb on - strandat 162.555 kb on - strandat 162.598 kb on + strandat 162.598 kb on + strandat 162.606 kb on + strandat 162.606 kb on + strandat 162.606 kb on - strandat 162.606 kb on - strandat 162.606 kb on - strandat 162.606 kb on - strandat 162.611 kb on + strandat 162.637 kb on + strandat 162.652 kb on + strandat 162.652 kb on + strandat 162.652 kb on + strandat 162.660 kb on - strand, within CSW01_00855at 162.725 kb on + strand, within CSW01_00855at 162.733 kb on - strand, within CSW01_00855at 162.748 kb on + strand, within CSW01_00855at 162.757 kb on + strand, within CSW01_00855at 162.765 kb on - strand, within CSW01_00855at 162.772 kb on + strand, within CSW01_00855at 162.772 kb on + strand, within CSW01_00855at 162.773 kb on + strand, within CSW01_00855at 162.773 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.789 kb on + strand, within CSW01_00855at 162.797 kb on - strand, within CSW01_00855at 162.902 kb on - strand, within CSW01_00855at 162.941 kb on + strand, within CSW01_00855at 162.949 kb on - strand, within CSW01_00855at 163.035 kb on + strand, within CSW01_00855at 163.043 kb on - strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.066 kb on - strand, within CSW01_00855at 163.079 kb on + strand, within CSW01_00855at 163.162 kb on + strand, within CSW01_00855at 163.201 kb on + strand, within CSW01_00855at 163.206 kb on + strand, within CSW01_00855at 163.232 kb on + strand, within CSW01_00855at 163.259 kb on + strand, within CSW01_00855at 163.267 kb on - strand, within CSW01_00855at 163.267 kb on - strand, within CSW01_00855at 163.274 kb on - strand, within CSW01_00855at 163.274 kb on - strand, within CSW01_00855at 163.317 kb on - strand, within CSW01_00855at 163.349 kb on - strand, within CSW01_00855at 163.355 kb on + strand, within CSW01_00855at 163.361 kb on + strand, within CSW01_00855at 163.363 kb on - strand, within CSW01_00855at 163.363 kb on - strand, within CSW01_00855at 163.363 kb on - strand, within CSW01_00855at 163.363 kb on - strand, within CSW01_00855at 163.422 kb on - strand, within CSW01_00855at 163.443 kb on + strand, within CSW01_00855at 163.443 kb on - strand, within CSW01_00855at 163.456 kb on + strand, within CSW01_00855at 163.464 kb on - strand, within CSW01_00855at 163.506 kb on - strand, within CSW01_00855at 163.587 kb on - strandat 163.604 kb on + strandat 163.660 kb on + strandat 163.668 kb on - strandat 163.756 kb on + strand, within CSW01_00860at 163.802 kb on - strand, within CSW01_00860at 163.841 kb on + strand, within CSW01_00860at 163.930 kb on - strand, within CSW01_00860at 163.956 kb on + strand, within CSW01_00860at 163.989 kb on + strand, within CSW01_00860at 164.030 kb on + strand, within CSW01_00860at 164.221 kb on + strandat 164.221 kb on + strandat 164.221 kb on + strandat 164.228 kb on + strandat 164.228 kb on + strandat 164.229 kb on - strandat 164.229 kb on - strandat 164.229 kb on - strandat 164.238 kb on + strandat 164.244 kb on - strandat 164.246 kb on - strandat 164.354 kb on + strandat 164.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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161,561 + CSW01_00850 0.69 +0.6
161,604 + CSW01_00850 0.70 -0.0
161,657 + CSW01_00850 0.72 -1.1
161,713 - CSW01_00850 0.74 -0.6
161,732 - CSW01_00850 0.74 -1.0
161,772 + CSW01_00850 0.76 -0.2
161,799 - CSW01_00850 0.76 -0.9
161,806 - CSW01_00850 0.77 -0.4
161,824 + CSW01_00850 0.77 -0.5
161,824 + CSW01_00850 0.77 -0.5
161,832 - CSW01_00850 0.78 -0.9
161,884 + CSW01_00850 0.79 -1.3
161,939 + CSW01_00850 0.81 -0.1
161,939 + CSW01_00850 0.81 -0.8
161,963 + CSW01_00850 0.82 -1.7
162,003 - CSW01_00850 0.83 -0.3
162,029 - CSW01_00850 0.84 -2.9
162,029 - CSW01_00850 0.84 +0.7
162,038 + CSW01_00850 0.84 -0.5
162,039 - CSW01_00850 0.84 -0.6
162,039 - CSW01_00850 0.84 -0.6
162,039 - CSW01_00850 0.84 +2.1
162,039 - CSW01_00850 0.84 -1.5
162,039 - CSW01_00850 0.84 -0.1
162,039 - CSW01_00850 0.84 -0.9
162,055 + CSW01_00850 0.85 -1.3
162,094 + CSW01_00850 0.86 +0.5
162,106 + CSW01_00850 0.86 -0.8
162,134 - CSW01_00850 0.87 -0.7
162,158 - CSW01_00850 0.88 -1.2
162,166 + CSW01_00850 0.88 +0.8
162,190 + CSW01_00850 0.89 -0.6
162,190 + CSW01_00850 0.89 -0.8
162,190 + CSW01_00850 0.89 -0.2
162,196 + CSW01_00850 0.89 -1.0
162,204 - CSW01_00850 0.89 -0.7
162,231 - +1.2
162,231 - -0.1
162,231 - -0.7
162,233 - -1.0
162,262 - -0.9
162,278 - -0.2
162,278 - -0.6
162,290 - -0.6
162,359 + -0.2
162,398 + -0.2
162,515 + -0.5
162,555 - +0.0
162,555 - +0.6
162,555 - -0.7
162,555 - -0.2
162,598 + -0.0
162,598 + -0.9
162,606 + +0.0
162,606 + +0.4
162,606 - -1.2
162,606 - +1.0
162,606 - -2.4
162,606 - +1.1
162,611 + -1.6
162,637 + -1.9
162,652 + -0.9
162,652 + -0.8
162,652 + +0.4
162,660 - CSW01_00855 0.11 -0.4
162,725 + CSW01_00855 0.17 -2.3
162,733 - CSW01_00855 0.17 -0.5
162,748 + CSW01_00855 0.19 -0.9
162,757 + CSW01_00855 0.19 -0.9
162,765 - CSW01_00855 0.20 +0.9
162,772 + CSW01_00855 0.21 -0.4
162,772 + CSW01_00855 0.21 -0.1
162,773 + CSW01_00855 0.21 +0.0
162,773 - CSW01_00855 0.21 -0.7
162,780 - CSW01_00855 0.21 +0.1
162,780 - CSW01_00855 0.21 +0.5
162,780 - CSW01_00855 0.21 -0.5
162,780 - CSW01_00855 0.21 -0.0
162,780 - CSW01_00855 0.21 -1.9
162,780 - CSW01_00855 0.21 -1.6
162,780 - CSW01_00855 0.21 -0.7
162,780 - CSW01_00855 0.21 +0.5
162,780 - CSW01_00855 0.21 -0.9
162,789 + CSW01_00855 0.22 -0.9
162,797 - CSW01_00855 0.23 +1.0
162,902 - CSW01_00855 0.33 -0.9
162,941 + CSW01_00855 0.36 -1.3
162,949 - CSW01_00855 0.37 +0.1
163,035 + CSW01_00855 0.45 -0.5
163,043 - CSW01_00855 0.45 -0.5
163,058 + CSW01_00855 0.47 -0.8
163,058 + CSW01_00855 0.47 -0.5
163,058 + CSW01_00855 0.47 -0.9
163,058 + CSW01_00855 0.47 -1.3
163,058 + CSW01_00855 0.47 -0.2
163,066 - CSW01_00855 0.47 -1.1
163,079 + CSW01_00855 0.49 -0.9
163,162 + CSW01_00855 0.56 -0.5
163,201 + CSW01_00855 0.60 -2.1
163,206 + CSW01_00855 0.60 +0.2
163,232 + CSW01_00855 0.62 -0.4
163,259 + CSW01_00855 0.65 -0.2
163,267 - CSW01_00855 0.65 -0.2
163,267 - CSW01_00855 0.65 -0.2
163,274 - CSW01_00855 0.66 -0.6
163,274 - CSW01_00855 0.66 -0.1
163,317 - CSW01_00855 0.70 +0.8
163,349 - CSW01_00855 0.73 +0.2
163,355 + CSW01_00855 0.73 -1.4
163,361 + CSW01_00855 0.74 -0.6
163,363 - CSW01_00855 0.74 -1.4
163,363 - CSW01_00855 0.74 -2.0
163,363 - CSW01_00855 0.74 -0.1
163,363 - CSW01_00855 0.74 +0.1
163,422 - CSW01_00855 0.79 -2.1
163,443 + CSW01_00855 0.81 -0.4
163,443 - CSW01_00855 0.81 -0.3
163,456 + CSW01_00855 0.83 -0.7
163,464 - CSW01_00855 0.83 -0.2
163,506 - CSW01_00855 0.87 -1.1
163,587 - -0.3
163,604 + -0.8
163,660 + -0.6
163,668 - +0.1
163,756 + CSW01_00860 0.15 -0.4
163,802 - CSW01_00860 0.23 +1.0
163,841 + CSW01_00860 0.29 +0.1
163,930 - CSW01_00860 0.44 +0.4
163,956 + CSW01_00860 0.48 -0.3
163,989 + CSW01_00860 0.54 -0.2
164,030 + CSW01_00860 0.61 -0.1
164,221 + -0.1
164,221 + +0.1
164,221 + -0.3
164,228 + +0.1
164,228 + -0.0
164,229 - +0.3
164,229 - -0.8
164,229 - -0.6
164,238 + -0.5
164,244 - -0.4
164,246 - -0.2
164,354 + +0.2
164,414 + -0.3

Or see this region's nucleotide sequence