Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00840

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00835 and CSW01_00840 are separated by 137 nucleotidesCSW01_00840 and CSW01_00845 are separated by 126 nucleotidesCSW01_00845 and CSW01_00850 are separated by 115 nucleotides CSW01_00835: CSW01_00835 - HTH-type transcriptional activator IlvY, at 156,408 to 157,304 _00835 CSW01_00840: CSW01_00840 - ketol-acid reductoisomerase, at 157,442 to 158,926 _00840 CSW01_00845: CSW01_00845 - cytoplasmic protein, at 159,053 to 159,304 _00845 CSW01_00850: CSW01_00850 - multidrug resistance protein, at 159,420 to 162,530 _00850 Position (kb) 157 158 159Strain fitness (log2 ratio) -1 0 1 2at 156.511 kb on + strand, within CSW01_00835at 156.699 kb on - strand, within CSW01_00835at 156.706 kb on + strand, within CSW01_00835at 156.722 kb on - strand, within CSW01_00835at 156.765 kb on - strand, within CSW01_00835at 156.770 kb on + strand, within CSW01_00835at 156.925 kb on + strand, within CSW01_00835at 156.925 kb on + strand, within CSW01_00835at 156.980 kb on + strand, within CSW01_00835at 156.988 kb on - strand, within CSW01_00835at 156.992 kb on + strand, within CSW01_00835at 157.017 kb on + strand, within CSW01_00835at 157.025 kb on - strand, within CSW01_00835at 157.091 kb on - strand, within CSW01_00835at 157.136 kb on + strand, within CSW01_00835at 157.136 kb on + strand, within CSW01_00835at 157.141 kb on + strand, within CSW01_00835at 157.142 kb on - strand, within CSW01_00835at 157.142 kb on - strand, within CSW01_00835at 157.144 kb on - strand, within CSW01_00835at 157.144 kb on - strand, within CSW01_00835at 157.144 kb on - strand, within CSW01_00835at 157.144 kb on - strand, within CSW01_00835at 157.220 kb on + strandat 157.265 kb on + strandat 157.374 kb on + strandat 157.469 kb on - strandat 157.595 kb on - strand, within CSW01_00840at 157.599 kb on + strand, within CSW01_00840at 157.606 kb on - strand, within CSW01_00840at 157.642 kb on + strand, within CSW01_00840at 157.703 kb on + strand, within CSW01_00840at 157.721 kb on - strand, within CSW01_00840at 157.771 kb on + strand, within CSW01_00840at 157.782 kb on - strand, within CSW01_00840at 157.820 kb on + strand, within CSW01_00840at 157.823 kb on - strand, within CSW01_00840at 157.828 kb on - strand, within CSW01_00840at 157.828 kb on - strand, within CSW01_00840at 157.828 kb on - strand, within CSW01_00840at 157.828 kb on - strand, within CSW01_00840at 157.828 kb on - strand, within CSW01_00840at 157.833 kb on - strand, within CSW01_00840at 157.894 kb on - strand, within CSW01_00840at 157.939 kb on - strand, within CSW01_00840at 158.000 kb on + strand, within CSW01_00840at 158.001 kb on - strand, within CSW01_00840at 158.025 kb on - strand, within CSW01_00840at 158.136 kb on + strand, within CSW01_00840at 158.247 kb on + strand, within CSW01_00840at 158.255 kb on - strand, within CSW01_00840at 158.272 kb on + strand, within CSW01_00840at 158.272 kb on + strand, within CSW01_00840at 158.272 kb on + strand, within CSW01_00840at 158.272 kb on + strand, within CSW01_00840at 158.280 kb on - strand, within CSW01_00840at 158.280 kb on - strand, within CSW01_00840at 158.280 kb on - strand, within CSW01_00840at 158.303 kb on - strand, within CSW01_00840at 158.303 kb on - strand, within CSW01_00840at 158.305 kb on + strand, within CSW01_00840at 158.314 kb on + strand, within CSW01_00840at 158.382 kb on - strand, within CSW01_00840at 158.587 kb on - strand, within CSW01_00840at 158.693 kb on + strand, within CSW01_00840at 158.729 kb on + strand, within CSW01_00840at 158.745 kb on + strand, within CSW01_00840at 158.791 kb on - strandat 158.871 kb on + strandat 158.871 kb on + strandat 158.899 kb on + strandat 158.913 kb on - strandat 158.954 kb on + strandat 158.954 kb on + strandat 158.954 kb on + strandat 158.983 kb on + strandat 158.985 kb on - strandat 159.025 kb on - strandat 159.025 kb on - strandat 159.054 kb on + strandat 159.057 kb on - strandat 159.417 kb on + strandat 159.439 kb on + strandat 159.446 kb on - strandat 159.475 kb on + strandat 159.606 kb on + strandat 159.619 kb on - strandat 159.639 kb on - strandat 159.648 kb on - strandat 159.675 kb on + strandat 159.675 kb on + strandat 159.698 kb on + strandat 159.698 kb on + strandat 159.706 kb on - strandat 159.718 kb on + strandat 159.732 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.887 kb on + strand, within CSW01_00850

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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156,511 + CSW01_00835 0.11 +0.9
156,699 - CSW01_00835 0.32 +0.2
156,706 + CSW01_00835 0.33 -0.2
156,722 - CSW01_00835 0.35 +1.2
156,765 - CSW01_00835 0.40 +0.1
156,770 + CSW01_00835 0.40 +0.1
156,925 + CSW01_00835 0.58 +0.3
156,925 + CSW01_00835 0.58 +1.0
156,980 + CSW01_00835 0.64 -0.5
156,988 - CSW01_00835 0.65 +0.2
156,992 + CSW01_00835 0.65 -0.1
157,017 + CSW01_00835 0.68 +0.2
157,025 - CSW01_00835 0.69 +0.0
157,091 - CSW01_00835 0.76 -0.1
157,136 + CSW01_00835 0.81 -0.6
157,136 + CSW01_00835 0.81 -0.7
157,141 + CSW01_00835 0.82 -1.7
157,142 - CSW01_00835 0.82 +0.5
157,142 - CSW01_00835 0.82 +1.1
157,144 - CSW01_00835 0.82 +0.4
157,144 - CSW01_00835 0.82 +0.4
157,144 - CSW01_00835 0.82 +1.1
157,144 - CSW01_00835 0.82 -0.1
157,220 + -0.3
157,265 + +0.2
157,374 + -0.9
157,469 - +0.0
157,595 - CSW01_00840 0.10 +0.4
157,599 + CSW01_00840 0.11 +0.4
157,606 - CSW01_00840 0.11 +0.1
157,642 + CSW01_00840 0.13 -0.4
157,703 + CSW01_00840 0.18 -0.5
157,721 - CSW01_00840 0.19 +0.2
157,771 + CSW01_00840 0.22 +1.8
157,782 - CSW01_00840 0.23 +0.0
157,820 + CSW01_00840 0.25 -0.2
157,823 - CSW01_00840 0.26 +0.2
157,828 - CSW01_00840 0.26 +0.5
157,828 - CSW01_00840 0.26 +0.5
157,828 - CSW01_00840 0.26 +0.9
157,828 - CSW01_00840 0.26 +1.0
157,828 - CSW01_00840 0.26 -0.0
157,833 - CSW01_00840 0.26 +0.5
157,894 - CSW01_00840 0.30 +0.2
157,939 - CSW01_00840 0.33 +0.5
158,000 + CSW01_00840 0.38 -0.9
158,001 - CSW01_00840 0.38 +0.7
158,025 - CSW01_00840 0.39 +0.2
158,136 + CSW01_00840 0.47 +0.2
158,247 + CSW01_00840 0.54 +0.2
158,255 - CSW01_00840 0.55 -0.2
158,272 + CSW01_00840 0.56 +0.8
158,272 + CSW01_00840 0.56 -0.1
158,272 + CSW01_00840 0.56 +0.4
158,272 + CSW01_00840 0.56 -0.1
158,280 - CSW01_00840 0.56 +0.3
158,280 - CSW01_00840 0.56 -0.2
158,280 - CSW01_00840 0.56 +0.3
158,303 - CSW01_00840 0.58 -0.2
158,303 - CSW01_00840 0.58 +0.3
158,305 + CSW01_00840 0.58 +1.4
158,314 + CSW01_00840 0.59 -0.7
158,382 - CSW01_00840 0.63 +1.0
158,587 - CSW01_00840 0.77 +0.3
158,693 + CSW01_00840 0.84 -0.0
158,729 + CSW01_00840 0.87 -1.1
158,745 + CSW01_00840 0.88 -0.6
158,791 - -0.4
158,871 + -0.5
158,871 + +0.1
158,899 + -0.6
158,913 - -0.1
158,954 + -1.7
158,954 + -0.2
158,954 + +0.1
158,983 + +0.4
158,985 - +0.2
159,025 - +0.2
159,025 - -0.3
159,054 + -0.2
159,057 - -0.3
159,417 + +0.8
159,439 + +0.4
159,446 - +0.3
159,475 + +1.1
159,606 + -1.2
159,619 - -0.4
159,639 - -1.0
159,648 - -0.2
159,675 + -0.1
159,675 + -0.1
159,698 + -0.4
159,698 + -1.0
159,706 - -0.2
159,718 + +0.0
159,732 + CSW01_00850 0.10 -0.3
159,850 + CSW01_00850 0.14 -1.1
159,850 + CSW01_00850 0.14 +0.1
159,850 + CSW01_00850 0.14 -0.9
159,850 + CSW01_00850 0.14 -0.9
159,850 + CSW01_00850 0.14 -0.1
159,850 + CSW01_00850 0.14 -0.6
159,858 - CSW01_00850 0.14 -0.8
159,858 - CSW01_00850 0.14 -0.2
159,858 - CSW01_00850 0.14 +0.2
159,858 - CSW01_00850 0.14 -1.3
159,858 - CSW01_00850 0.14 -0.3
159,887 + CSW01_00850 0.15 -1.3

Or see this region's nucleotide sequence