Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00405 and CSW01_00410 are separated by 56 nucleotides CSW01_00410 and CSW01_00415 are separated by 45 nucleotides CSW01_00415 and CSW01_00420 are separated by 23 nucleotides CSW01_00420 and CSW01_00425 are separated by 75 nucleotides CSW01_00425 and CSW01_00430 are separated by 132 nucleotides
CSW01_00405: CSW01_00405 - EamA family transporter, at 75,267 to 76,154
_00405
CSW01_00410: CSW01_00410 - universal stress protein UspA, at 76,211 to 76,636
_00410
CSW01_00415: CSW01_00415 - hypothetical protein, at 76,682 to 76,777
_00415
CSW01_00420: CSW01_00420 - ferritin, at 76,801 to 77,328
_00420
CSW01_00425: CSW01_00425 - universal stress protein B, at 77,404 to 77,727
_00425
CSW01_00430: CSW01_00430 - NAD(P)/FAD-dependent oxidoreductase, at 77,860 to 79,056
_00430
Position (kb) 76
77
78 Strain fitness (log2 ratio) -1
0
1
2 at 75.888 kb on + strand, within CSW01_00405 at 75.888 kb on + strand, within CSW01_00405 at 75.888 kb on + strand, within CSW01_00405 at 75.888 kb on + strand, within CSW01_00405 at 75.888 kb on + strand, within CSW01_00405 at 75.894 kb on + strand, within CSW01_00405 at 75.896 kb on - strand, within CSW01_00405 at 75.896 kb on - strand, within CSW01_00405 at 75.904 kb on + strand, within CSW01_00405 at 75.937 kb on + strand, within CSW01_00405 at 75.951 kb on + strand, within CSW01_00405 at 75.953 kb on + strand, within CSW01_00405 at 75.996 kb on + strand, within CSW01_00405 at 75.996 kb on + strand, within CSW01_00405 at 76.004 kb on - strand, within CSW01_00405 at 76.004 kb on - strand, within CSW01_00405 at 76.004 kb on - strand, within CSW01_00405 at 76.004 kb on - strand, within CSW01_00405 at 76.037 kb on - strand, within CSW01_00405 at 76.046 kb on - strand, within CSW01_00405 at 76.085 kb on - strand at 76.099 kb on - strand at 76.099 kb on - strand at 76.128 kb on - strand at 76.147 kb on - strand at 76.151 kb on + strand at 76.151 kb on + strand at 76.151 kb on + strand at 76.172 kb on + strand at 76.187 kb on + strand at 76.261 kb on - strand, within CSW01_00410 at 76.261 kb on - strand, within CSW01_00410 at 76.267 kb on + strand, within CSW01_00410 at 76.272 kb on + strand, within CSW01_00410 at 76.275 kb on - strand, within CSW01_00410 at 76.275 kb on - strand, within CSW01_00410 at 76.316 kb on - strand, within CSW01_00410 at 76.344 kb on + strand, within CSW01_00410 at 76.362 kb on - strand, within CSW01_00410 at 76.385 kb on + strand, within CSW01_00410 at 76.410 kb on - strand, within CSW01_00410 at 76.491 kb on + strand, within CSW01_00410 at 76.491 kb on + strand, within CSW01_00410 at 76.494 kb on + strand, within CSW01_00410 at 76.496 kb on + strand, within CSW01_00410 at 76.499 kb on - strand, within CSW01_00410 at 76.499 kb on - strand, within CSW01_00410 at 76.501 kb on + strand, within CSW01_00410 at 76.501 kb on + strand, within CSW01_00410 at 76.501 kb on + strand, within CSW01_00410 at 76.502 kb on - strand, within CSW01_00410 at 76.502 kb on - strand, within CSW01_00410 at 76.502 kb on - strand, within CSW01_00410 at 76.506 kb on + strand, within CSW01_00410 at 76.509 kb on - strand, within CSW01_00410 at 76.509 kb on - strand, within CSW01_00410 at 76.511 kb on + strand, within CSW01_00410 at 76.519 kb on - strand, within CSW01_00410 at 76.519 kb on - strand, within CSW01_00410 at 76.523 kb on - strand, within CSW01_00410 at 76.559 kb on - strand, within CSW01_00410 at 76.592 kb on - strand, within CSW01_00410 at 76.600 kb on - strand at 76.603 kb on + strand at 76.659 kb on + strand at 76.659 kb on + strand at 76.659 kb on + strand at 76.659 kb on + strand at 76.659 kb on + strand at 76.659 kb on + strand at 76.667 kb on - strand at 76.669 kb on + strand at 76.669 kb on + strand at 76.669 kb on + strand at 76.669 kb on + strand at 76.669 kb on + strand at 76.674 kb on + strand at 76.674 kb on + strand at 76.674 kb on + strand at 76.674 kb on + strand at 76.677 kb on - strand at 76.677 kb on - strand at 76.677 kb on - strand at 76.680 kb on - strand at 76.682 kb on - strand at 76.682 kb on - strand at 76.682 kb on - strand at 76.724 kb on + strand, within CSW01_00415 at 76.724 kb on + strand, within CSW01_00415 at 76.756 kb on + strand, within CSW01_00415 at 76.897 kb on + strand, within CSW01_00420 at 76.923 kb on - strand, within CSW01_00420 at 76.931 kb on - strand, within CSW01_00420 at 76.976 kb on - strand, within CSW01_00420 at 77.006 kb on + strand, within CSW01_00420 at 77.049 kb on + strand, within CSW01_00420 at 77.129 kb on + strand, within CSW01_00420 at 77.130 kb on - strand, within CSW01_00420 at 77.137 kb on - strand, within CSW01_00420 at 77.146 kb on + strand, within CSW01_00420 at 77.171 kb on + strand, within CSW01_00420 at 77.179 kb on - strand, within CSW01_00420 at 77.179 kb on - strand, within CSW01_00420 at 77.179 kb on - strand, within CSW01_00420 at 77.181 kb on + strand, within CSW01_00420 at 77.181 kb on + strand, within CSW01_00420 at 77.189 kb on - strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.219 kb on + strand, within CSW01_00420 at 77.227 kb on - strand, within CSW01_00420 at 77.227 kb on - strand, within CSW01_00420 at 77.227 kb on - strand, within CSW01_00420 at 77.387 kb on - strand at 77.395 kb on - strand at 77.429 kb on - strand at 77.474 kb on - strand, within CSW01_00425 at 77.515 kb on - strand, within CSW01_00425 at 77.546 kb on + strand, within CSW01_00425 at 77.565 kb on - strand, within CSW01_00425 at 77.565 kb on - strand, within CSW01_00425 at 77.606 kb on + strand, within CSW01_00425 at 77.614 kb on - strand, within CSW01_00425 at 77.657 kb on + strand, within CSW01_00425 at 77.657 kb on - strand, within CSW01_00425 at 77.695 kb on + strand at 77.697 kb on - strand at 77.703 kb on - strand at 77.703 kb on - strand at 77.781 kb on - strand at 77.816 kb on + strand at 77.823 kb on + strand at 77.824 kb on - strand at 77.824 kb on - strand at 77.866 kb on + strand at 77.879 kb on - strand at 77.914 kb on + strand at 77.914 kb on + strand at 77.914 kb on + strand at 77.927 kb on - strand at 77.932 kb on - strand at 77.932 kb on - strand at 77.954 kb on + strand at 78.067 kb on + strand, within CSW01_00430 at 78.145 kb on + strand, within CSW01_00430 at 78.146 kb on + strand, within CSW01_00430 at 78.146 kb on + strand, within CSW01_00430 at 78.146 kb on + strand, within CSW01_00430 at 78.146 kb on + strand, within CSW01_00430 at 78.146 kb on + strand, within CSW01_00430 at 78.154 kb on - strand, within CSW01_00430 at 78.154 kb on - strand, within CSW01_00430 at 78.154 kb on - strand, within CSW01_00430 at 78.154 kb on - strand, within CSW01_00430 at 78.182 kb on - strand, within CSW01_00430 at 78.182 kb on - strand, within CSW01_00430 at 78.208 kb on + strand, within CSW01_00430 at 78.221 kb on + strand, within CSW01_00430 at 78.228 kb on - strand, within CSW01_00430 at 78.231 kb on + strand, within CSW01_00430 at 78.232 kb on - strand, within CSW01_00430 at 78.259 kb on - strand, within CSW01_00430 at 78.269 kb on + strand, within CSW01_00430 at 78.273 kb on + strand, within CSW01_00430 at 78.277 kb on - strand, within CSW01_00430 at 78.279 kb on - strand, within CSW01_00430 at 78.281 kb on - strand, within CSW01_00430 at 78.290 kb on + strand, within CSW01_00430 at 78.290 kb on + strand, within CSW01_00430 at 78.290 kb on + strand, within CSW01_00430 at 78.298 kb on - strand, within CSW01_00430 at 78.298 kb on - strand, within CSW01_00430 at 78.298 kb on - strand, within CSW01_00430
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A remove 75,888 + CSW01_00405 0.70 +0.7 75,888 + CSW01_00405 0.70 -1.0 75,888 + CSW01_00405 0.70 -0.1 75,888 + CSW01_00405 0.70 -0.1 75,888 + CSW01_00405 0.70 +0.2 75,894 + CSW01_00405 0.71 +0.4 75,896 - CSW01_00405 0.71 -0.1 75,896 - CSW01_00405 0.71 +0.6 75,904 + CSW01_00405 0.72 +1.1 75,937 + CSW01_00405 0.75 -0.7 75,951 + CSW01_00405 0.77 +0.9 75,953 + CSW01_00405 0.77 +0.4 75,996 + CSW01_00405 0.82 -0.3 75,996 + CSW01_00405 0.82 +0.5 76,004 - CSW01_00405 0.83 +0.4 76,004 - CSW01_00405 0.83 -0.2 76,004 - CSW01_00405 0.83 -0.2 76,004 - CSW01_00405 0.83 +0.1 76,037 - CSW01_00405 0.87 -0.3 76,046 - CSW01_00405 0.88 -1.2 76,085 - +0.1 76,099 - -0.2 76,099 - -0.7 76,128 - -1.4 76,147 - -0.2 76,151 + +0.9 76,151 + -0.6 76,151 + -0.4 76,172 + +0.1 76,187 + +0.2 76,261 - CSW01_00410 0.12 +1.6 76,261 - CSW01_00410 0.12 -0.2 76,267 + CSW01_00410 0.13 -0.2 76,272 + CSW01_00410 0.14 +0.5 76,275 - CSW01_00410 0.15 -0.1 76,275 - CSW01_00410 0.15 +1.2 76,316 - CSW01_00410 0.25 +0.3 76,344 + CSW01_00410 0.31 +0.7 76,362 - CSW01_00410 0.35 -0.7 76,385 + CSW01_00410 0.41 +0.7 76,410 - CSW01_00410 0.47 -0.1 76,491 + CSW01_00410 0.66 -0.0 76,491 + CSW01_00410 0.66 +0.1 76,494 + CSW01_00410 0.66 -0.1 76,496 + CSW01_00410 0.67 -0.8 76,499 - CSW01_00410 0.68 +1.8 76,499 - CSW01_00410 0.68 +0.6 76,501 + CSW01_00410 0.68 +0.5 76,501 + CSW01_00410 0.68 +1.4 76,501 + CSW01_00410 0.68 +0.0 76,502 - CSW01_00410 0.68 -0.1 76,502 - CSW01_00410 0.68 -1.0 76,502 - CSW01_00410 0.68 +0.5 76,506 + CSW01_00410 0.69 +0.2 76,509 - CSW01_00410 0.70 +0.1 76,509 - CSW01_00410 0.70 -0.3 76,511 + CSW01_00410 0.70 +0.4 76,519 - CSW01_00410 0.72 +0.1 76,519 - CSW01_00410 0.72 +0.3 76,523 - CSW01_00410 0.73 +0.2 76,559 - CSW01_00410 0.82 +0.6 76,592 - CSW01_00410 0.89 +0.5 76,600 - +0.3 76,603 + +0.0 76,659 + +0.3 76,659 + +0.6 76,659 + +0.4 76,659 + +0.2 76,659 + +0.1 76,659 + -1.1 76,667 - -0.5 76,669 + +0.2 76,669 + +0.5 76,669 + +0.0 76,669 + -0.4 76,669 + +0.1 76,674 + +0.2 76,674 + -0.0 76,674 + +0.1 76,674 + +0.7 76,677 - +0.1 76,677 - +0.2 76,677 - +0.8 76,680 - -0.1 76,682 - +0.1 76,682 - -0.3 76,682 - +1.1 76,724 + CSW01_00415 0.44 -0.1 76,724 + CSW01_00415 0.44 -0.0 76,756 + CSW01_00415 0.77 -0.4 76,897 + CSW01_00420 0.18 +0.1 76,923 - CSW01_00420 0.23 -0.0 76,931 - CSW01_00420 0.25 -0.4 76,976 - CSW01_00420 0.33 -0.1 77,006 + CSW01_00420 0.39 -0.2 77,049 + CSW01_00420 0.47 -0.9 77,129 + CSW01_00420 0.62 -0.9 77,130 - CSW01_00420 0.62 -0.5 77,137 - CSW01_00420 0.64 -0.6 77,146 + CSW01_00420 0.65 -0.1 77,171 + CSW01_00420 0.70 -0.3 77,179 - CSW01_00420 0.72 +2.0 77,179 - CSW01_00420 0.72 -0.2 77,179 - CSW01_00420 0.72 +0.5 77,181 + CSW01_00420 0.72 -0.2 77,181 + CSW01_00420 0.72 +0.2 77,189 - CSW01_00420 0.73 +0.1 77,219 + CSW01_00420 0.79 +0.1 77,219 + CSW01_00420 0.79 -0.2 77,219 + CSW01_00420 0.79 -0.0 77,219 + CSW01_00420 0.79 -0.5 77,219 + CSW01_00420 0.79 +0.5 77,219 + CSW01_00420 0.79 -1.0 77,219 + CSW01_00420 0.79 +0.5 77,219 + CSW01_00420 0.79 +0.3 77,219 + CSW01_00420 0.79 -0.4 77,227 - CSW01_00420 0.81 -0.3 77,227 - CSW01_00420 0.81 +0.1 77,227 - CSW01_00420 0.81 -0.4 77,387 - -0.9 77,395 - -0.0 77,429 - +0.1 77,474 - CSW01_00425 0.22 -0.2 77,515 - CSW01_00425 0.34 -0.0 77,546 + CSW01_00425 0.44 +1.6 77,565 - CSW01_00425 0.50 +0.0 77,565 - CSW01_00425 0.50 +0.5 77,606 + CSW01_00425 0.62 +0.4 77,614 - CSW01_00425 0.65 +0.0 77,657 + CSW01_00425 0.78 -0.7 77,657 - CSW01_00425 0.78 +0.1 77,695 + -1.5 77,697 - +1.3 77,703 - +0.1 77,703 - +0.3 77,781 - +0.5 77,816 + +0.1 77,823 + +0.1 77,824 - -1.2 77,824 - -0.1 77,866 + +0.5 77,879 - +2.0 77,914 + -0.5 77,914 + +0.8 77,914 + +0.2 77,927 - -0.2 77,932 - -0.0 77,932 - -0.3 77,954 + -1.4 78,067 + CSW01_00430 0.17 +0.3 78,145 + CSW01_00430 0.24 +2.0 78,146 + CSW01_00430 0.24 -0.4 78,146 + CSW01_00430 0.24 -0.9 78,146 + CSW01_00430 0.24 +0.5 78,146 + CSW01_00430 0.24 +0.0 78,146 + CSW01_00430 0.24 +0.5 78,154 - CSW01_00430 0.25 -0.4 78,154 - CSW01_00430 0.25 +0.2 78,154 - CSW01_00430 0.25 -0.4 78,154 - CSW01_00430 0.25 +0.2 78,182 - CSW01_00430 0.27 +0.2 78,182 - CSW01_00430 0.27 -0.0 78,208 + CSW01_00430 0.29 +0.2 78,221 + CSW01_00430 0.30 -0.9 78,228 - CSW01_00430 0.31 +0.1 78,231 + CSW01_00430 0.31 -0.1 78,232 - CSW01_00430 0.31 -0.2 78,259 - CSW01_00430 0.33 +2.0 78,269 + CSW01_00430 0.34 -0.0 78,273 + CSW01_00430 0.35 -0.3 78,277 - CSW01_00430 0.35 +0.2 78,279 - CSW01_00430 0.35 +1.7 78,281 - CSW01_00430 0.35 -0.8 78,290 + CSW01_00430 0.36 +0.1 78,290 + CSW01_00430 0.36 -0.4 78,290 + CSW01_00430 0.36 +0.1 78,298 - CSW01_00430 0.37 -0.3 78,298 - CSW01_00430 0.37 -0.4 78,298 - CSW01_00430 0.37 +0.0
Or see this region's nucleotide sequence