Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27560 and AO356_27565 are separated by 219 nucleotides AO356_27565 and AO356_27570 are separated by 135 nucleotides AO356_27570 and AO356_27575 are separated by 56 nucleotides
AO356_27560: AO356_27560 - hypothetical protein, at 6,287,586 to 6,288,695
_27560
AO356_27565: AO356_27565 - RND transporter, at 6,288,915 to 6,290,378
_27565
AO356_27570: AO356_27570 - short-chain dehydrogenase, at 6,290,514 to 6,291,299
_27570
AO356_27575: AO356_27575 - Long-chain fatty acid transport protein, at 6,291,356 to 6,292,627
_27575
Position (kb)
6288
6289
6290
6291 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.924 kb on - strand, within AO356_27560 at 6287.924 kb on - strand, within AO356_27560 at 6288.011 kb on - strand, within AO356_27560 at 6288.570 kb on + strand, within AO356_27560 at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.707 kb on - strand at 6288.707 kb on - strand at 6288.806 kb on + strand at 6288.828 kb on - strand at 6289.306 kb on - strand, within AO356_27565 at 6289.322 kb on + strand, within AO356_27565 at 6289.322 kb on + strand, within AO356_27565 at 6289.323 kb on - strand, within AO356_27565 at 6289.326 kb on + strand, within AO356_27565 at 6289.473 kb on + strand, within AO356_27565 at 6289.473 kb on + strand, within AO356_27565 at 6289.474 kb on - strand, within AO356_27565 at 6289.474 kb on - strand, within AO356_27565 at 6289.474 kb on - strand, within AO356_27565 at 6289.566 kb on + strand, within AO356_27565 at 6289.872 kb on + strand, within AO356_27565 at 6289.873 kb on - strand, within AO356_27565 at 6289.873 kb on - strand, within AO356_27565 at 6290.514 kb on - strand at 6290.589 kb on + strand at 6290.590 kb on - strand at 6290.760 kb on - strand, within AO356_27570 at 6290.760 kb on - strand, within AO356_27570 at 6290.859 kb on - strand, within AO356_27570 at 6290.952 kb on + strand, within AO356_27570 at 6290.997 kb on + strand, within AO356_27570 at 6290.997 kb on + strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6291.358 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 6,287,923 + AO356_27560 0.30 +0.4 6,287,923 + AO356_27560 0.30 +1.9 6,287,923 + AO356_27560 0.30 +0.8 6,287,923 + AO356_27560 0.30 -0.8 6,287,924 - AO356_27560 0.30 +0.8 6,287,924 - AO356_27560 0.30 -0.2 6,288,011 - AO356_27560 0.38 -1.2 6,288,570 + AO356_27560 0.89 +0.4 6,288,695 + -2.0 6,288,695 + +0.3 6,288,695 + -0.4 6,288,695 + +0.4 6,288,695 + -1.0 6,288,696 - -0.4 6,288,696 - +0.8 6,288,696 - +0.0 6,288,696 - +0.4 6,288,696 - +1.4 6,288,707 - +0.2 6,288,707 - +0.6 6,288,806 + -0.1 6,288,828 - +0.7 6,289,306 - AO356_27565 0.27 +0.7 6,289,322 + AO356_27565 0.28 -0.8 6,289,322 + AO356_27565 0.28 +1.0 6,289,323 - AO356_27565 0.28 -0.4 6,289,326 + AO356_27565 0.28 -0.1 6,289,473 + AO356_27565 0.38 +0.3 6,289,473 + AO356_27565 0.38 +0.7 6,289,474 - AO356_27565 0.38 +0.7 6,289,474 - AO356_27565 0.38 -0.5 6,289,474 - AO356_27565 0.38 +0.3 6,289,566 + AO356_27565 0.44 -1.4 6,289,872 + AO356_27565 0.65 +0.1 6,289,873 - AO356_27565 0.65 -0.4 6,289,873 - AO356_27565 0.65 -1.2 6,290,514 - -0.7 6,290,589 + +0.4 6,290,590 - -0.9 6,290,760 - AO356_27570 0.31 +0.0 6,290,760 - AO356_27570 0.31 -0.3 6,290,859 - AO356_27570 0.44 +0.8 6,290,952 + AO356_27570 0.56 -0.4 6,290,997 + AO356_27570 0.61 +1.7 6,290,997 + AO356_27570 0.61 -0.2 6,290,998 - AO356_27570 0.62 -0.3 6,290,998 - AO356_27570 0.62 -1.6 6,290,998 - AO356_27570 0.62 -0.5 6,290,998 - AO356_27570 0.62 +0.7 6,290,998 - AO356_27570 0.62 +0.8 6,291,358 - +0.6
Or see this region's nucleotide sequence