Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27550 and AO356_27555 are separated by 53 nucleotides AO356_27555 and AO356_27560 overlap by 4 nucleotides
AO356_27550: AO356_27550 - 3-oxoacyl-ACP synthase, at 6,283,163 to 6,284,455
_27550
AO356_27555: AO356_27555 - multidrug transporter, at 6,284,509 to 6,287,589
_27555
AO356_27560: AO356_27560 - hypothetical protein, at 6,287,586 to 6,288,695
_27560
Position (kb)
6284
6285
6286
6287
6288 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6283.513 kb on + strand, within AO356_27550 at 6283.514 kb on - strand, within AO356_27550 at 6283.514 kb on - strand, within AO356_27550 at 6284.477 kb on + strand at 6284.477 kb on + strand at 6284.477 kb on + strand at 6284.478 kb on - strand at 6284.478 kb on - strand at 6284.510 kb on + strand at 6284.534 kb on - strand at 6284.574 kb on - strand at 6284.574 kb on - strand at 6284.600 kb on - strand at 6284.605 kb on - strand at 6284.605 kb on - strand at 6284.620 kb on - strand at 6284.636 kb on + strand at 6285.608 kb on + strand, within AO356_27555 at 6285.799 kb on + strand, within AO356_27555 at 6285.799 kb on + strand, within AO356_27555 at 6285.800 kb on - strand, within AO356_27555 at 6285.801 kb on + strand, within AO356_27555 at 6285.801 kb on + strand, within AO356_27555 at 6285.801 kb on + strand, within AO356_27555 at 6285.801 kb on + strand, within AO356_27555 at 6285.802 kb on - strand, within AO356_27555 at 6285.802 kb on - strand, within AO356_27555 at 6285.803 kb on + strand, within AO356_27555 at 6285.803 kb on + strand, within AO356_27555 at 6285.804 kb on - strand, within AO356_27555 at 6285.804 kb on - strand, within AO356_27555 at 6285.804 kb on - strand, within AO356_27555 at 6285.804 kb on - strand, within AO356_27555 at 6285.804 kb on - strand, within AO356_27555 at 6285.894 kb on - strand, within AO356_27555 at 6285.894 kb on - strand, within AO356_27555 at 6286.061 kb on + strand, within AO356_27555 at 6286.062 kb on - strand, within AO356_27555 at 6286.062 kb on - strand, within AO356_27555 at 6286.062 kb on - strand, within AO356_27555 at 6286.077 kb on - strand, within AO356_27555 at 6286.136 kb on + strand, within AO356_27555 at 6286.211 kb on + strand, within AO356_27555 at 6286.212 kb on - strand, within AO356_27555 at 6286.335 kb on - strand, within AO356_27555 at 6286.791 kb on - strand, within AO356_27555 at 6287.258 kb on + strand, within AO356_27555 at 6287.258 kb on + strand, within AO356_27555 at 6287.439 kb on + strand at 6287.440 kb on - strand at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.924 kb on - strand, within AO356_27560 at 6287.924 kb on - strand, within AO356_27560 at 6288.011 kb on - strand, within AO356_27560 at 6288.570 kb on + strand, within AO356_27560
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 6,283,513 + AO356_27550 0.27 +0.4 6,283,514 - AO356_27550 0.27 -0.9 6,283,514 - AO356_27550 0.27 +0.0 6,284,477 + +0.0 6,284,477 + -0.3 6,284,477 + +0.8 6,284,478 - +1.1 6,284,478 - +0.3 6,284,510 + -0.0 6,284,534 - -0.2 6,284,574 - +0.3 6,284,574 - +0.4 6,284,600 - -0.7 6,284,605 - -0.7 6,284,605 - -0.8 6,284,620 - +0.3 6,284,636 + -0.0 6,285,608 + AO356_27555 0.36 -0.3 6,285,799 + AO356_27555 0.42 +0.2 6,285,799 + AO356_27555 0.42 -0.0 6,285,800 - AO356_27555 0.42 -0.4 6,285,801 + AO356_27555 0.42 -0.2 6,285,801 + AO356_27555 0.42 +0.6 6,285,801 + AO356_27555 0.42 +0.8 6,285,801 + AO356_27555 0.42 -0.5 6,285,802 - AO356_27555 0.42 -1.0 6,285,802 - AO356_27555 0.42 +0.7 6,285,803 + AO356_27555 0.42 +0.1 6,285,803 + AO356_27555 0.42 +0.0 6,285,804 - AO356_27555 0.42 -0.5 6,285,804 - AO356_27555 0.42 +0.6 6,285,804 - AO356_27555 0.42 +0.5 6,285,804 - AO356_27555 0.42 -0.2 6,285,804 - AO356_27555 0.42 +0.7 6,285,894 - AO356_27555 0.45 +0.1 6,285,894 - AO356_27555 0.45 -0.3 6,286,061 + AO356_27555 0.50 +0.4 6,286,062 - AO356_27555 0.50 +0.1 6,286,062 - AO356_27555 0.50 -0.0 6,286,062 - AO356_27555 0.50 +0.6 6,286,077 - AO356_27555 0.51 -0.8 6,286,136 + AO356_27555 0.53 +1.3 6,286,211 + AO356_27555 0.55 +0.5 6,286,212 - AO356_27555 0.55 -0.4 6,286,335 - AO356_27555 0.59 +1.4 6,286,791 - AO356_27555 0.74 +0.0 6,287,258 + AO356_27555 0.89 -2.0 6,287,258 + AO356_27555 0.89 +0.2 6,287,439 + +0.3 6,287,440 - -0.0 6,287,923 + AO356_27560 0.30 +0.4 6,287,923 + AO356_27560 0.30 +1.9 6,287,923 + AO356_27560 0.30 +0.8 6,287,923 + AO356_27560 0.30 -0.8 6,287,924 - AO356_27560 0.30 +0.8 6,287,924 - AO356_27560 0.30 -0.2 6,288,011 - AO356_27560 0.38 -1.2 6,288,570 + AO356_27560 0.89 +0.4
Or see this region's nucleotide sequence