Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27320 and AO356_27325 are separated by 17 nucleotides AO356_27325 and AO356_27330 overlap by 4 nucleotides
AO356_27320: AO356_27320 - MFS transporter permease, at 6,226,386 to 6,227,687
_27320
AO356_27325: AO356_27325 - transketolase, at 6,227,705 to 6,228,553
_27325
AO356_27330: AO356_27330 - transketolase, at 6,228,550 to 6,229,572
_27330
Position (kb)
6227
6228
6229 Strain fitness (log2 ratio)
-2
-1
0
1 at 6226.731 kb on + strand, within AO356_27320 at 6226.733 kb on + strand, within AO356_27320 at 6226.734 kb on - strand, within AO356_27320 at 6226.792 kb on - strand, within AO356_27320 at 6226.796 kb on + strand, within AO356_27320 at 6226.796 kb on + strand, within AO356_27320 at 6226.797 kb on - strand, within AO356_27320 at 6226.797 kb on - strand, within AO356_27320 at 6226.800 kb on + strand, within AO356_27320 at 6226.800 kb on + strand, within AO356_27320 at 6226.816 kb on - strand, within AO356_27320 at 6227.208 kb on - strand, within AO356_27320 at 6227.265 kb on + strand, within AO356_27320 at 6227.719 kb on - strand at 6227.808 kb on - strand, within AO356_27325 at 6227.808 kb on - strand, within AO356_27325 at 6227.852 kb on + strand, within AO356_27325 at 6227.871 kb on - strand, within AO356_27325 at 6227.945 kb on + strand, within AO356_27325 at 6227.946 kb on - strand, within AO356_27325 at 6227.997 kb on - strand, within AO356_27325 at 6227.997 kb on - strand, within AO356_27325 at 6228.042 kb on - strand, within AO356_27325 at 6228.042 kb on - strand, within AO356_27325 at 6228.184 kb on + strand, within AO356_27325 at 6228.185 kb on - strand, within AO356_27325 at 6228.185 kb on - strand, within AO356_27325 at 6228.495 kb on + strand at 6228.496 kb on - strand at 6228.568 kb on - strand at 6228.739 kb on + strand, within AO356_27330 at 6228.754 kb on - strand, within AO356_27330 at 6228.785 kb on - strand, within AO356_27330 at 6228.869 kb on - strand, within AO356_27330 at 6229.111 kb on + strand, within AO356_27330 at 6229.111 kb on + strand, within AO356_27330 at 6229.111 kb on + strand, within AO356_27330 at 6229.112 kb on - strand, within AO356_27330 at 6229.136 kb on + strand, within AO356_27330 at 6229.156 kb on + strand, within AO356_27330 at 6229.156 kb on + strand, within AO356_27330 at 6229.156 kb on + strand, within AO356_27330 at 6229.215 kb on - strand, within AO356_27330 at 6229.467 kb on - strand, within AO356_27330
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 6,226,731 + AO356_27320 0.26 -1.1 6,226,733 + AO356_27320 0.27 +0.8 6,226,734 - AO356_27320 0.27 +0.2 6,226,792 - AO356_27320 0.31 -0.5 6,226,796 + AO356_27320 0.31 +0.5 6,226,796 + AO356_27320 0.31 +0.4 6,226,797 - AO356_27320 0.32 +0.5 6,226,797 - AO356_27320 0.32 +0.0 6,226,800 + AO356_27320 0.32 +0.4 6,226,800 + AO356_27320 0.32 -0.6 6,226,816 - AO356_27320 0.33 -0.1 6,227,208 - AO356_27320 0.63 +0.8 6,227,265 + AO356_27320 0.68 -0.4 6,227,719 - +1.1 6,227,808 - AO356_27325 0.12 -0.3 6,227,808 - AO356_27325 0.12 -2.0 6,227,852 + AO356_27325 0.17 +0.6 6,227,871 - AO356_27325 0.20 -0.9 6,227,945 + AO356_27325 0.28 +0.3 6,227,946 - AO356_27325 0.28 -0.3 6,227,997 - AO356_27325 0.34 +0.9 6,227,997 - AO356_27325 0.34 +1.0 6,228,042 - AO356_27325 0.40 +1.1 6,228,042 - AO356_27325 0.40 +0.6 6,228,184 + AO356_27325 0.56 -0.7 6,228,185 - AO356_27325 0.57 -0.2 6,228,185 - AO356_27325 0.57 -0.0 6,228,495 + -0.0 6,228,496 - +0.1 6,228,568 - -0.4 6,228,739 + AO356_27330 0.18 -1.6 6,228,754 - AO356_27330 0.20 -0.8 6,228,785 - AO356_27330 0.23 -1.0 6,228,869 - AO356_27330 0.31 -1.2 6,229,111 + AO356_27330 0.55 -0.8 6,229,111 + AO356_27330 0.55 -0.1 6,229,111 + AO356_27330 0.55 +0.5 6,229,112 - AO356_27330 0.55 -0.4 6,229,136 + AO356_27330 0.57 +0.8 6,229,156 + AO356_27330 0.59 +0.7 6,229,156 + AO356_27330 0.59 +0.6 6,229,156 + AO356_27330 0.59 -0.5 6,229,215 - AO356_27330 0.65 -0.0 6,229,467 - AO356_27330 0.90 -1.4
Or see this region's nucleotide sequence