Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27275 and AO356_27280 overlap by 4 nucleotides AO356_27280 and AO356_27285 are separated by 147 nucleotides AO356_27285 and AO356_27290 overlap by 1 nucleotides AO356_27290 and AO356_27295 are separated by 23 nucleotides
AO356_27275: AO356_27275 - histidine kinase, at 6,217,410 to 6,218,834
_27275
AO356_27280: AO356_27280 - XRE family transcriptional regulator, at 6,218,831 to 6,219,493
_27280
AO356_27285: AO356_27285 - hypothetical protein, at 6,219,641 to 6,219,907
_27285
AO356_27290: AO356_27290 - cytochrome B, at 6,219,907 to 6,220,452
_27290
AO356_27295: AO356_27295 - hypothetical protein, at 6,220,476 to 6,221,744
_27295
Position (kb)
6218
6219
6220 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6217.909 kb on + strand, within AO356_27275 at 6217.909 kb on + strand, within AO356_27275 at 6217.910 kb on - strand, within AO356_27275 at 6218.130 kb on + strand, within AO356_27275 at 6218.130 kb on + strand, within AO356_27275 at 6218.208 kb on + strand, within AO356_27275 at 6218.400 kb on + strand, within AO356_27275 at 6218.576 kb on - strand, within AO356_27275 at 6218.632 kb on + strand, within AO356_27275 at 6218.719 kb on + strand at 6218.720 kb on - strand at 6218.849 kb on + strand at 6218.849 kb on + strand at 6218.850 kb on - strand at 6218.850 kb on - strand at 6218.929 kb on + strand, within AO356_27280 at 6218.958 kb on + strand, within AO356_27280 at 6219.421 kb on - strand, within AO356_27280 at 6219.579 kb on + strand at 6219.813 kb on - strand, within AO356_27285 at 6219.821 kb on + strand, within AO356_27285 at 6219.821 kb on + strand, within AO356_27285 at 6219.821 kb on + strand, within AO356_27285 at 6219.822 kb on - strand, within AO356_27285 at 6219.822 kb on - strand, within AO356_27285 at 6219.897 kb on + strand at 6219.898 kb on - strand at 6219.898 kb on - strand at 6219.898 kb on - strand at 6219.988 kb on + strand, within AO356_27290 at 6219.988 kb on + strand, within AO356_27290 at 6219.989 kb on - strand, within AO356_27290 at 6219.989 kb on - strand, within AO356_27290 at 6220.037 kb on - strand, within AO356_27290 at 6220.037 kb on - strand, within AO356_27290 at 6220.451 kb on - strand at 6220.451 kb on - strand at 6220.451 kb on - strand at 6220.475 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 6,217,909 + AO356_27275 0.35 +1.4 6,217,909 + AO356_27275 0.35 -1.2 6,217,910 - AO356_27275 0.35 +0.5 6,218,130 + AO356_27275 0.51 +1.2 6,218,130 + AO356_27275 0.51 +0.2 6,218,208 + AO356_27275 0.56 +1.4 6,218,400 + AO356_27275 0.69 -0.9 6,218,576 - AO356_27275 0.82 -0.2 6,218,632 + AO356_27275 0.86 -0.8 6,218,719 + -0.0 6,218,720 - +0.6 6,218,849 + -0.2 6,218,849 + -0.2 6,218,850 - +2.3 6,218,850 - +1.4 6,218,929 + AO356_27280 0.15 -0.6 6,218,958 + AO356_27280 0.19 +0.8 6,219,421 - AO356_27280 0.89 -0.8 6,219,579 + -2.4 6,219,813 - AO356_27285 0.64 +1.0 6,219,821 + AO356_27285 0.67 -0.2 6,219,821 + AO356_27285 0.67 +1.0 6,219,821 + AO356_27285 0.67 +0.1 6,219,822 - AO356_27285 0.68 -0.6 6,219,822 - AO356_27285 0.68 +0.2 6,219,897 + +0.1 6,219,898 - +0.2 6,219,898 - -1.7 6,219,898 - -0.2 6,219,988 + AO356_27290 0.15 +1.4 6,219,988 + AO356_27290 0.15 -0.6 6,219,989 - AO356_27290 0.15 -0.3 6,219,989 - AO356_27290 0.15 -0.5 6,220,037 - AO356_27290 0.24 +1.4 6,220,037 - AO356_27290 0.24 -0.3 6,220,451 - +0.1 6,220,451 - +0.6 6,220,451 - -0.2 6,220,475 + +1.1
Or see this region's nucleotide sequence