Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25290 and AO356_25295 are separated by 103 nucleotides AO356_25295 and AO356_25300 overlap by 4 nucleotides AO356_25300 and AO356_25305 overlap by 4 nucleotides AO356_25305 and AO356_25310 are separated by 21 nucleotides AO356_25310 and AO356_25315 are separated by 5 nucleotides
AO356_25290: AO356_25290 - metallophosphoesterase, at 5,725,650 to 5,726,108
_25290
AO356_25295: AO356_25295 - hypothetical protein, at 5,726,212 to 5,726,778
_25295
AO356_25300: AO356_25300 - hypothetical protein, at 5,726,775 to 5,727,314
_25300
AO356_25305: AO356_25305 - metal ABC transporter ATPase, at 5,727,311 to 5,727,616
_25305
AO356_25310: AO356_25310 - hypothetical protein, at 5,727,638 to 5,728,126
_25310
AO356_25315: AO356_25315 - cyclopropane-fatty-acyl-phospholipid synthase, at 5,728,132 to 5,729,394
_25315
Position (kb) 5726
5727
5728 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5725.794 kb on + strand, within AO356_25290 at 5725.794 kb on + strand, within AO356_25290 at 5725.794 kb on + strand, within AO356_25290 at 5725.794 kb on + strand, within AO356_25290 at 5725.795 kb on - strand, within AO356_25290 at 5725.795 kb on - strand, within AO356_25290 at 5725.795 kb on - strand, within AO356_25290 at 5726.160 kb on - strand at 5726.163 kb on + strand at 5726.163 kb on + strand at 5726.163 kb on + strand at 5726.163 kb on + strand at 5726.164 kb on - strand at 5726.270 kb on + strand, within AO356_25295 at 5726.270 kb on + strand, within AO356_25295 at 5726.271 kb on - strand, within AO356_25295 at 5726.271 kb on - strand, within AO356_25295 at 5726.271 kb on - strand, within AO356_25295 at 5726.275 kb on + strand, within AO356_25295 at 5726.276 kb on - strand, within AO356_25295 at 5726.276 kb on - strand, within AO356_25295 at 5726.276 kb on - strand, within AO356_25295 at 5726.276 kb on - strand, within AO356_25295 at 5726.276 kb on - strand, within AO356_25295 at 5726.369 kb on - strand, within AO356_25295 at 5726.570 kb on + strand, within AO356_25295 at 5726.571 kb on - strand, within AO356_25295 at 5726.626 kb on + strand, within AO356_25295 at 5726.627 kb on - strand, within AO356_25295 at 5726.627 kb on - strand, within AO356_25295 at 5726.806 kb on + strand at 5727.177 kb on + strand, within AO356_25300 at 5727.177 kb on + strand, within AO356_25300 at 5727.177 kb on + strand, within AO356_25300 at 5727.178 kb on - strand, within AO356_25300 at 5727.205 kb on - strand, within AO356_25300 at 5727.205 kb on - strand, within AO356_25300 at 5727.393 kb on - strand, within AO356_25305 at 5727.393 kb on - strand, within AO356_25305 at 5727.396 kb on + strand, within AO356_25305 at 5727.396 kb on + strand, within AO356_25305 at 5727.396 kb on + strand, within AO356_25305 at 5727.397 kb on - strand, within AO356_25305 at 5727.397 kb on - strand, within AO356_25305 at 5727.397 kb on - strand, within AO356_25305 at 5727.427 kb on + strand, within AO356_25305 at 5727.427 kb on + strand, within AO356_25305 at 5727.428 kb on - strand, within AO356_25305 at 5727.428 kb on - strand, within AO356_25305 at 5727.615 kb on - strand at 5727.677 kb on + strand at 5727.677 kb on + strand at 5727.678 kb on - strand at 5727.762 kb on + strand, within AO356_25310 at 5727.763 kb on - strand, within AO356_25310 at 5727.833 kb on - strand, within AO356_25310 at 5728.133 kb on + strand at 5728.230 kb on - strand at 5728.230 kb on - strand at 5728.238 kb on + strand at 5728.239 kb on - strand at 5728.271 kb on + strand, within AO356_25315
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 5,725,794 + AO356_25290 0.31 -0.3 5,725,794 + AO356_25290 0.31 +0.8 5,725,794 + AO356_25290 0.31 +0.1 5,725,794 + AO356_25290 0.31 +0.2 5,725,795 - AO356_25290 0.32 +0.4 5,725,795 - AO356_25290 0.32 +0.4 5,725,795 - AO356_25290 0.32 +1.0 5,726,160 - -0.5 5,726,163 + -1.1 5,726,163 + -0.2 5,726,163 + -0.5 5,726,163 + -0.9 5,726,164 - -0.9 5,726,270 + AO356_25295 0.10 +0.5 5,726,270 + AO356_25295 0.10 -0.3 5,726,271 - AO356_25295 0.10 +1.3 5,726,271 - AO356_25295 0.10 -0.1 5,726,271 - AO356_25295 0.10 -1.1 5,726,275 + AO356_25295 0.11 +0.3 5,726,276 - AO356_25295 0.11 +0.6 5,726,276 - AO356_25295 0.11 +0.2 5,726,276 - AO356_25295 0.11 +2.0 5,726,276 - AO356_25295 0.11 +1.0 5,726,276 - AO356_25295 0.11 +1.2 5,726,369 - AO356_25295 0.28 -0.1 5,726,570 + AO356_25295 0.63 +0.7 5,726,571 - AO356_25295 0.63 -0.5 5,726,626 + AO356_25295 0.73 -0.6 5,726,627 - AO356_25295 0.73 +0.6 5,726,627 - AO356_25295 0.73 -0.2 5,726,806 + +0.7 5,727,177 + AO356_25300 0.74 +0.4 5,727,177 + AO356_25300 0.74 -0.6 5,727,177 + AO356_25300 0.74 -0.2 5,727,178 - AO356_25300 0.75 -0.6 5,727,205 - AO356_25300 0.80 -0.9 5,727,205 - AO356_25300 0.80 -2.0 5,727,393 - AO356_25305 0.27 -0.0 5,727,393 - AO356_25305 0.27 +0.6 5,727,396 + AO356_25305 0.28 -1.4 5,727,396 + AO356_25305 0.28 +0.2 5,727,396 + AO356_25305 0.28 -0.1 5,727,397 - AO356_25305 0.28 -0.1 5,727,397 - AO356_25305 0.28 -0.0 5,727,397 - AO356_25305 0.28 +0.6 5,727,427 + AO356_25305 0.38 +0.6 5,727,427 + AO356_25305 0.38 -0.1 5,727,428 - AO356_25305 0.38 +2.4 5,727,428 - AO356_25305 0.38 -0.4 5,727,615 - -0.7 5,727,677 + -0.4 5,727,677 + -0.5 5,727,678 - -0.3 5,727,762 + AO356_25310 0.25 -0.7 5,727,763 - AO356_25310 0.26 +0.2 5,727,833 - AO356_25310 0.40 -0.7 5,728,133 + +0.1 5,728,230 - +0.8 5,728,230 - -0.3 5,728,238 + +0.6 5,728,239 - +0.5 5,728,271 + AO356_25315 0.11 +0.7
Or see this region's nucleotide sequence