Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24820
Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cephalothin 2 mg/ml |
---|---|---|---|---|---|
remove | |||||
5,625,996 | + | AO356_24815 | 0.83 | +0.7 | |
5,626,094 | + | AO356_24815 | 0.87 | +0.5 | |
5,626,095 | - | AO356_24815 | 0.87 | -1.1 | |
5,626,124 | + | AO356_24815 | 0.88 | +0.1 | |
5,626,124 | + | AO356_24815 | 0.88 | +0.2 | |
5,626,426 | - | -0.1 | |||
5,626,431 | + | +0.1 | |||
5,626,431 | + | +0.6 | |||
5,626,432 | - | +0.7 | |||
5,626,432 | - | -0.5 | |||
5,626,432 | - | -1.2 | |||
5,626,493 | + | +0.4 | |||
5,626,597 | + | -1.4 | |||
5,626,598 | - | -0.1 | |||
5,626,601 | + | -0.5 | |||
5,626,602 | - | +0.5 | |||
5,626,602 | - | -1.4 | |||
5,626,602 | - | +1.6 | |||
5,626,602 | - | -1.2 | |||
5,626,687 | + | +0.2 | |||
5,626,688 | - | -0.2 | |||
5,626,691 | + | +1.5 | |||
5,626,692 | - | -0.2 | |||
5,626,738 | + | -0.4 | |||
5,626,739 | - | -0.7 | |||
5,626,761 | - | +1.5 | |||
5,626,761 | - | +0.2 | |||
5,626,877 | + | AO356_24820 | 0.29 | -0.2 | |
5,627,078 | + | AO356_24820 | 0.81 | +2.5 | |
5,627,079 | - | AO356_24820 | 0.81 | +1.8 | |
5,627,079 | - | AO356_24820 | 0.81 | +0.6 | |
5,627,579 | + | AO356_24825 | 0.35 | -1.5 | |
5,627,580 | - | AO356_24825 | 0.35 | +0.9 | |
5,627,603 | + | AO356_24825 | 0.38 | +1.1 | |
5,627,603 | + | AO356_24825 | 0.38 | +0.1 | |
5,627,603 | + | AO356_24825 | 0.38 | -0.7 | |
5,627,715 | - | AO356_24825 | 0.51 | +0.3 | |
5,627,906 | + | AO356_24825 | 0.74 | +0.5 |
Or see this region's nucleotide sequence