Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24590

Experiment: Cephalothin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24585 and AO356_24590 are separated by 193 nucleotidesAO356_24590 and AO356_24595 are separated by 149 nucleotides AO356_24585: AO356_24585 - L-arabonate dehydratase (EC 4.2.1.25) (from data), at 5,558,025 to 5,559,761 _24585 AO356_24590: AO356_24590 - MFS transporter, at 5,559,955 to 5,561,277 _24590 AO356_24595: AO356_24595 - 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data), at 5,561,427 to 5,562,419 _24595 Position (kb) 5559 5560 5561 5562Strain fitness (log2 ratio) -2 -1 0 1 2at 5559.056 kb on + strand, within AO356_24585at 5559.056 kb on + strand, within AO356_24585at 5559.056 kb on + strand, within AO356_24585at 5559.057 kb on - strand, within AO356_24585at 5559.057 kb on - strand, within AO356_24585at 5559.057 kb on - strand, within AO356_24585at 5559.070 kb on + strand, within AO356_24585at 5559.070 kb on + strand, within AO356_24585at 5559.070 kb on + strand, within AO356_24585at 5559.071 kb on - strand, within AO356_24585at 5559.807 kb on - strandat 5559.807 kb on - strandat 5559.807 kb on - strandat 5559.976 kb on - strandat 5559.987 kb on + strandat 5559.988 kb on - strandat 5560.021 kb on + strandat 5560.105 kb on + strand, within AO356_24590at 5560.138 kb on + strand, within AO356_24590at 5560.138 kb on + strand, within AO356_24590at 5560.263 kb on + strand, within AO356_24590at 5560.264 kb on - strand, within AO356_24590at 5560.264 kb on - strand, within AO356_24590at 5560.264 kb on - strand, within AO356_24590at 5560.264 kb on - strand, within AO356_24590at 5560.270 kb on + strand, within AO356_24590at 5560.270 kb on + strand, within AO356_24590at 5560.270 kb on + strand, within AO356_24590at 5560.271 kb on - strand, within AO356_24590at 5560.271 kb on - strand, within AO356_24590at 5560.327 kb on + strand, within AO356_24590at 5560.327 kb on + strand, within AO356_24590at 5560.328 kb on - strand, within AO356_24590at 5560.328 kb on - strand, within AO356_24590at 5560.330 kb on + strand, within AO356_24590at 5560.330 kb on + strand, within AO356_24590at 5560.330 kb on + strand, within AO356_24590at 5560.330 kb on + strand, within AO356_24590at 5560.330 kb on + strand, within AO356_24590at 5560.330 kb on + strand, within AO356_24590at 5560.331 kb on - strand, within AO356_24590at 5560.331 kb on - strand, within AO356_24590at 5560.398 kb on + strand, within AO356_24590at 5560.398 kb on + strand, within AO356_24590at 5560.696 kb on + strand, within AO356_24590at 5560.696 kb on + strand, within AO356_24590at 5560.720 kb on + strand, within AO356_24590at 5560.720 kb on + strand, within AO356_24590at 5560.721 kb on - strand, within AO356_24590at 5560.721 kb on - strand, within AO356_24590at 5560.721 kb on - strand, within AO356_24590at 5560.804 kb on + strand, within AO356_24590at 5560.805 kb on - strand, within AO356_24590at 5560.805 kb on - strand, within AO356_24590at 5560.805 kb on - strand, within AO356_24590at 5560.835 kb on + strand, within AO356_24590at 5560.888 kb on + strand, within AO356_24590at 5560.888 kb on + strand, within AO356_24590at 5560.889 kb on - strand, within AO356_24590at 5561.086 kb on + strand, within AO356_24590at 5561.086 kb on + strand, within AO356_24590at 5561.149 kb on + strandat 5561.149 kb on + strandat 5561.201 kb on - strandat 5561.289 kb on + strandat 5561.290 kb on - strandat 5561.290 kb on - strandat 5561.412 kb on + strandat 5561.426 kb on + strandat 5561.426 kb on + strandat 5561.426 kb on + strandat 5561.434 kb on + strandat 5561.435 kb on - strandat 5561.607 kb on + strand, within AO356_24595at 5561.844 kb on + strand, within AO356_24595at 5561.944 kb on - strand, within AO356_24595at 5561.944 kb on - strand, within AO356_24595at 5561.944 kb on - strand, within AO356_24595at 5561.944 kb on - strand, within AO356_24595at 5562.031 kb on - strand, within AO356_24595at 5562.125 kb on + strand, within AO356_24595at 5562.225 kb on + strand, within AO356_24595at 5562.225 kb on + strand, within AO356_24595at 5562.225 kb on + strand, within AO356_24595at 5562.226 kb on - strand, within AO356_24595at 5562.226 kb on - strand, within AO356_24595

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml
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5,559,056 + AO356_24585 0.59 -0.9
5,559,056 + AO356_24585 0.59 -0.9
5,559,056 + AO356_24585 0.59 -0.4
5,559,057 - AO356_24585 0.59 +0.6
5,559,057 - AO356_24585 0.59 -0.3
5,559,057 - AO356_24585 0.59 -1.0
5,559,070 + AO356_24585 0.60 +0.1
5,559,070 + AO356_24585 0.60 +0.2
5,559,070 + AO356_24585 0.60 -0.3
5,559,071 - AO356_24585 0.60 -0.1
5,559,807 - -2.7
5,559,807 - -0.1
5,559,807 - -0.1
5,559,976 - -0.4
5,559,987 + +0.2
5,559,988 - +1.3
5,560,021 + -0.9
5,560,105 + AO356_24590 0.11 -0.6
5,560,138 + AO356_24590 0.14 +0.3
5,560,138 + AO356_24590 0.14 +0.4
5,560,263 + AO356_24590 0.23 +0.5
5,560,264 - AO356_24590 0.23 +0.0
5,560,264 - AO356_24590 0.23 +0.6
5,560,264 - AO356_24590 0.23 -0.6
5,560,264 - AO356_24590 0.23 +0.1
5,560,270 + AO356_24590 0.24 +0.2
5,560,270 + AO356_24590 0.24 -1.0
5,560,270 + AO356_24590 0.24 -0.4
5,560,271 - AO356_24590 0.24 -1.3
5,560,271 - AO356_24590 0.24 +0.6
5,560,327 + AO356_24590 0.28 +0.0
5,560,327 + AO356_24590 0.28 -0.4
5,560,328 - AO356_24590 0.28 -2.4
5,560,328 - AO356_24590 0.28 +0.1
5,560,330 + AO356_24590 0.28 +0.6
5,560,330 + AO356_24590 0.28 +0.7
5,560,330 + AO356_24590 0.28 +0.3
5,560,330 + AO356_24590 0.28 -0.4
5,560,330 + AO356_24590 0.28 +0.1
5,560,330 + AO356_24590 0.28 +0.1
5,560,331 - AO356_24590 0.28 +0.1
5,560,331 - AO356_24590 0.28 +1.1
5,560,398 + AO356_24590 0.33 +0.5
5,560,398 + AO356_24590 0.33 +0.7
5,560,696 + AO356_24590 0.56 +0.5
5,560,696 + AO356_24590 0.56 +1.2
5,560,720 + AO356_24590 0.58 +0.3
5,560,720 + AO356_24590 0.58 +0.9
5,560,721 - AO356_24590 0.58 +0.0
5,560,721 - AO356_24590 0.58 +0.2
5,560,721 - AO356_24590 0.58 +1.3
5,560,804 + AO356_24590 0.64 -0.0
5,560,805 - AO356_24590 0.64 +0.5
5,560,805 - AO356_24590 0.64 +0.3
5,560,805 - AO356_24590 0.64 -1.7
5,560,835 + AO356_24590 0.67 +1.1
5,560,888 + AO356_24590 0.71 -0.2
5,560,888 + AO356_24590 0.71 +2.4
5,560,889 - AO356_24590 0.71 +0.5
5,561,086 + AO356_24590 0.85 +0.4
5,561,086 + AO356_24590 0.85 -2.4
5,561,149 + -0.2
5,561,149 + -0.5
5,561,201 - -0.4
5,561,289 + -0.4
5,561,290 - +0.8
5,561,290 - +0.6
5,561,412 + +0.1
5,561,426 + -0.2
5,561,426 + -0.4
5,561,426 + -0.0
5,561,434 + +0.4
5,561,435 - -0.1
5,561,607 + AO356_24595 0.18 -0.9
5,561,844 + AO356_24595 0.42 +0.9
5,561,944 - AO356_24595 0.52 +0.7
5,561,944 - AO356_24595 0.52 +0.5
5,561,944 - AO356_24595 0.52 +0.5
5,561,944 - AO356_24595 0.52 +1.7
5,562,031 - AO356_24595 0.61 -0.0
5,562,125 + AO356_24595 0.70 -0.0
5,562,225 + AO356_24595 0.80 +0.3
5,562,225 + AO356_24595 0.80 +1.0
5,562,225 + AO356_24595 0.80 +0.6
5,562,226 - AO356_24595 0.80 +0.7
5,562,226 - AO356_24595 0.80 -0.1

Or see this region's nucleotide sequence