Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23775

Experiment: Cephalothin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23760 and AO356_23765 are separated by 221 nucleotidesAO356_23765 and AO356_23770 overlap by 2 nucleotidesAO356_23770 and AO356_23775 are separated by 88 nucleotidesAO356_23775 and AO356_23780 are separated by 15 nucleotidesAO356_23780 and AO356_23785 are separated by 29 nucleotides AO356_23760: AO356_23760 - hypothetical protein, at 5,333,935 to 5,334,282 _23760 AO356_23765: AO356_23765 - hypothetical protein, at 5,334,504 to 5,334,692 _23765 AO356_23770: AO356_23770 - hypothetical protein, at 5,334,691 to 5,334,915 _23770 AO356_23775: AO356_23775 - transcriptional regulator, at 5,335,004 to 5,335,954 _23775 AO356_23780: AO356_23780 - carbonic anhydrase, at 5,335,970 to 5,336,629 _23780 AO356_23785: AO356_23785 - hypothetical protein, at 5,336,659 to 5,336,907 _23785 Position (kb) 5335 5336Strain fitness (log2 ratio) -1 0 1at 5334.022 kb on + strand, within AO356_23760at 5334.023 kb on - strand, within AO356_23760at 5334.023 kb on - strand, within AO356_23760at 5334.023 kb on - strand, within AO356_23760at 5334.023 kb on - strand, within AO356_23760at 5334.023 kb on - strand, within AO356_23760at 5334.025 kb on - strand, within AO356_23760at 5334.227 kb on - strand, within AO356_23760at 5334.227 kb on - strand, within AO356_23760at 5334.227 kb on - strand, within AO356_23760at 5334.232 kb on + strand, within AO356_23760at 5334.232 kb on + strand, within AO356_23760at 5334.339 kb on - strandat 5334.398 kb on + strandat 5334.417 kb on + strandat 5334.505 kb on + strandat 5334.505 kb on + strandat 5334.505 kb on + strandat 5334.505 kb on + strandat 5334.506 kb on - strandat 5334.754 kb on + strand, within AO356_23770at 5334.755 kb on - strand, within AO356_23770at 5334.844 kb on - strand, within AO356_23770at 5334.962 kb on + strandat 5334.963 kb on - strandat 5334.963 kb on - strandat 5334.963 kb on - strandat 5335.011 kb on + strandat 5335.011 kb on + strandat 5335.011 kb on + strandat 5335.012 kb on - strandat 5335.313 kb on + strand, within AO356_23775at 5335.314 kb on - strand, within AO356_23775at 5335.314 kb on - strand, within AO356_23775at 5335.314 kb on - strand, within AO356_23775at 5335.361 kb on - strand, within AO356_23775at 5335.426 kb on - strand, within AO356_23775at 5335.426 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.530 kb on - strand, within AO356_23775at 5335.609 kb on + strand, within AO356_23775at 5335.609 kb on + strand, within AO356_23775at 5335.610 kb on - strand, within AO356_23775at 5335.625 kb on + strand, within AO356_23775at 5335.625 kb on + strand, within AO356_23775at 5335.626 kb on - strand, within AO356_23775at 5335.626 kb on - strand, within AO356_23775at 5335.626 kb on - strand, within AO356_23775at 5335.826 kb on + strand, within AO356_23775at 5335.826 kb on + strand, within AO356_23775at 5335.826 kb on + strand, within AO356_23775at 5335.826 kb on + strand, within AO356_23775at 5335.826 kb on + strand, within AO356_23775at 5335.826 kb on + strand, within AO356_23775at 5335.827 kb on - strand, within AO356_23775at 5335.827 kb on - strand, within AO356_23775at 5335.827 kb on - strand, within AO356_23775at 5335.827 kb on - strand, within AO356_23775at 5335.827 kb on - strand, within AO356_23775at 5335.827 kb on - strand, within AO356_23775at 5336.086 kb on - strand, within AO356_23780at 5336.086 kb on - strand, within AO356_23780at 5336.382 kb on + strand, within AO356_23780at 5336.421 kb on + strand, within AO356_23780at 5336.421 kb on + strand, within AO356_23780at 5336.422 kb on - strand, within AO356_23780at 5336.422 kb on - strand, within AO356_23780at 5336.422 kb on - strand, within AO356_23780at 5336.422 kb on - strand, within AO356_23780at 5336.649 kb on + strandat 5336.649 kb on + strandat 5336.650 kb on - strandat 5336.650 kb on - strandat 5336.691 kb on - strand, within AO356_23785at 5336.691 kb on - strand, within AO356_23785at 5336.727 kb on - strand, within AO356_23785at 5336.810 kb on + strand, within AO356_23785at 5336.811 kb on - strand, within AO356_23785at 5336.816 kb on + strand, within AO356_23785at 5336.817 kb on - strand, within AO356_23785at 5336.929 kb on + strandat 5336.930 kb on - strandat 5336.949 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml
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5,334,022 + AO356_23760 0.25 +0.5
5,334,023 - AO356_23760 0.25 -0.4
5,334,023 - AO356_23760 0.25 +0.3
5,334,023 - AO356_23760 0.25 -0.0
5,334,023 - AO356_23760 0.25 +0.5
5,334,023 - AO356_23760 0.25 +0.6
5,334,025 - AO356_23760 0.26 +1.0
5,334,227 - AO356_23760 0.84 +0.6
5,334,227 - AO356_23760 0.84 +0.7
5,334,227 - AO356_23760 0.84 +1.3
5,334,232 + AO356_23760 0.85 +0.2
5,334,232 + AO356_23760 0.85 +0.1
5,334,339 - -1.2
5,334,398 + +0.9
5,334,417 + +0.1
5,334,505 + +0.2
5,334,505 + -1.7
5,334,505 + -0.2
5,334,505 + +0.1
5,334,506 - -0.7
5,334,754 + AO356_23770 0.28 -0.1
5,334,755 - AO356_23770 0.28 +1.3
5,334,844 - AO356_23770 0.68 +0.7
5,334,962 + +0.0
5,334,963 - -0.2
5,334,963 - -0.1
5,334,963 - -0.2
5,335,011 + +0.4
5,335,011 + -0.1
5,335,011 + -0.7
5,335,012 - -0.3
5,335,313 + AO356_23775 0.32 +0.2
5,335,314 - AO356_23775 0.33 +1.2
5,335,314 - AO356_23775 0.33 -0.6
5,335,314 - AO356_23775 0.33 +0.1
5,335,361 - AO356_23775 0.38 +0.2
5,335,426 - AO356_23775 0.44 -0.3
5,335,426 - AO356_23775 0.44 -0.7
5,335,530 - AO356_23775 0.55 -0.7
5,335,530 - AO356_23775 0.55 +0.4
5,335,530 - AO356_23775 0.55 -1.2
5,335,530 - AO356_23775 0.55 +0.5
5,335,530 - AO356_23775 0.55 -0.5
5,335,530 - AO356_23775 0.55 +0.3
5,335,530 - AO356_23775 0.55 -0.9
5,335,530 - AO356_23775 0.55 +0.2
5,335,609 + AO356_23775 0.64 +0.8
5,335,609 + AO356_23775 0.64 +0.6
5,335,610 - AO356_23775 0.64 -1.2
5,335,625 + AO356_23775 0.65 +0.9
5,335,625 + AO356_23775 0.65 +0.3
5,335,626 - AO356_23775 0.65 +0.1
5,335,626 - AO356_23775 0.65 -0.1
5,335,626 - AO356_23775 0.65 +0.1
5,335,826 + AO356_23775 0.86 -1.2
5,335,826 + AO356_23775 0.86 -0.6
5,335,826 + AO356_23775 0.86 +0.1
5,335,826 + AO356_23775 0.86 -0.3
5,335,826 + AO356_23775 0.86 -0.1
5,335,826 + AO356_23775 0.86 -0.4
5,335,827 - AO356_23775 0.87 -0.4
5,335,827 - AO356_23775 0.87 +0.3
5,335,827 - AO356_23775 0.87 -0.5
5,335,827 - AO356_23775 0.87 -0.4
5,335,827 - AO356_23775 0.87 +0.2
5,335,827 - AO356_23775 0.87 -0.8
5,336,086 - AO356_23780 0.18 -0.3
5,336,086 - AO356_23780 0.18 +0.4
5,336,382 + AO356_23780 0.62 -0.3
5,336,421 + AO356_23780 0.68 +1.5
5,336,421 + AO356_23780 0.68 +0.1
5,336,422 - AO356_23780 0.68 +0.4
5,336,422 - AO356_23780 0.68 +0.0
5,336,422 - AO356_23780 0.68 +0.9
5,336,422 - AO356_23780 0.68 +0.2
5,336,649 + -0.3
5,336,649 + +0.5
5,336,650 - +0.5
5,336,650 - -0.4
5,336,691 - AO356_23785 0.13 -0.2
5,336,691 - AO356_23785 0.13 -0.3
5,336,727 - AO356_23785 0.27 +0.0
5,336,810 + AO356_23785 0.61 +0.1
5,336,811 - AO356_23785 0.61 -0.7
5,336,816 + AO356_23785 0.63 -0.3
5,336,817 - AO356_23785 0.63 +0.2
5,336,929 + -0.0
5,336,930 - +1.0
5,336,949 + -0.7

Or see this region's nucleotide sequence