Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22970 and AO356_22975 are separated by 257 nucleotides AO356_22975 and AO356_22980 are separated by 3 nucleotides
AO356_22970: AO356_22970 - Branched-chain amino acid aminotransferase (EC 2.6.1.42) <small>(from data)</small>, at 5,127,612 to 5,128,631
_22970
AO356_22975: AO356_22975 - Dihydrolipoyl dehydrogenase (EC 1.8.1.4) <small>(from data)</small>, at 5,128,889 to 5,130,274
_22975
AO356_22980: AO356_22980 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 5,130,278 to 5,131,546
_22980
Position (kb) 5128
5129
5130
5131 Strain fitness (log2 ratio) -2
-1
0
1 at 5128.007 kb on - strand, within AO356_22970 at 5128.066 kb on + strand, within AO356_22970 at 5128.066 kb on + strand, within AO356_22970 at 5128.067 kb on - strand, within AO356_22970 at 5128.162 kb on + strand, within AO356_22970 at 5128.163 kb on - strand, within AO356_22970 at 5128.280 kb on - strand, within AO356_22970 at 5128.474 kb on + strand, within AO356_22970 at 5128.588 kb on + strand at 5128.588 kb on + strand at 5128.588 kb on + strand at 5128.588 kb on + strand at 5128.589 kb on - strand at 5128.641 kb on + strand at 5128.641 kb on + strand at 5128.642 kb on - strand at 5128.703 kb on + strand at 5128.703 kb on + strand at 5128.703 kb on + strand at 5128.703 kb on + strand at 5128.703 kb on + strand at 5128.703 kb on + strand at 5128.703 kb on + strand at 5128.703 kb on + strand at 5128.703 kb on + strand at 5128.704 kb on - strand at 5128.704 kb on - strand at 5128.704 kb on - strand at 5128.704 kb on - strand at 5128.753 kb on + strand at 5128.753 kb on + strand at 5128.753 kb on + strand at 5128.753 kb on + strand at 5128.753 kb on + strand at 5128.753 kb on + strand at 5128.754 kb on - strand at 5128.754 kb on - strand at 5128.754 kb on - strand at 5128.754 kb on - strand at 5128.754 kb on - strand at 5128.754 kb on - strand at 5128.754 kb on - strand at 5128.804 kb on + strand at 5128.805 kb on - strand at 5129.064 kb on - strand, within AO356_22975 at 5129.064 kb on - strand, within AO356_22975 at 5129.572 kb on + strand, within AO356_22975 at 5129.573 kb on - strand, within AO356_22975 at 5129.583 kb on + strand, within AO356_22975 at 5129.583 kb on + strand, within AO356_22975 at 5129.584 kb on - strand, within AO356_22975 at 5129.643 kb on + strand, within AO356_22975 at 5129.643 kb on + strand, within AO356_22975 at 5129.643 kb on + strand, within AO356_22975 at 5129.644 kb on - strand, within AO356_22975 at 5129.730 kb on + strand, within AO356_22975 at 5129.730 kb on + strand, within AO356_22975 at 5130.220 kb on - strand at 5130.274 kb on + strand at 5130.274 kb on + strand at 5130.274 kb on + strand at 5130.274 kb on + strand at 5130.275 kb on - strand at 5130.275 kb on - strand at 5130.275 kb on - strand at 5130.279 kb on + strand at 5130.279 kb on + strand at 5130.280 kb on - strand at 5130.280 kb on - strand at 5130.280 kb on - strand at 5130.885 kb on + strand, within AO356_22980 at 5130.885 kb on + strand, within AO356_22980 at 5130.886 kb on - strand, within AO356_22980 at 5131.032 kb on + strand, within AO356_22980
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 5,128,007 - AO356_22970 0.39 -0.7 5,128,066 + AO356_22970 0.45 -0.6 5,128,066 + AO356_22970 0.45 -1.3 5,128,067 - AO356_22970 0.45 +0.5 5,128,162 + AO356_22970 0.54 +0.5 5,128,163 - AO356_22970 0.54 +0.1 5,128,280 - AO356_22970 0.65 -0.8 5,128,474 + AO356_22970 0.85 -1.2 5,128,588 + -0.5 5,128,588 + +1.0 5,128,588 + -0.3 5,128,588 + -0.8 5,128,589 - +0.5 5,128,641 + +0.5 5,128,641 + +0.1 5,128,642 - -0.9 5,128,703 + +0.0 5,128,703 + -1.4 5,128,703 + +0.8 5,128,703 + +0.2 5,128,703 + -0.2 5,128,703 + -0.2 5,128,703 + -0.2 5,128,703 + +0.4 5,128,703 + -0.8 5,128,704 - +1.2 5,128,704 - -0.4 5,128,704 - -0.5 5,128,704 - -0.3 5,128,753 + +0.7 5,128,753 + -0.4 5,128,753 + +0.2 5,128,753 + -0.2 5,128,753 + +0.1 5,128,753 + +0.4 5,128,754 - +0.5 5,128,754 - -1.2 5,128,754 - -0.2 5,128,754 - -0.0 5,128,754 - -0.9 5,128,754 - -0.2 5,128,754 - +1.1 5,128,804 + -0.6 5,128,805 - +0.7 5,129,064 - AO356_22975 0.13 +0.0 5,129,064 - AO356_22975 0.13 -2.3 5,129,572 + AO356_22975 0.49 +0.2 5,129,573 - AO356_22975 0.49 +0.4 5,129,583 + AO356_22975 0.50 +0.3 5,129,583 + AO356_22975 0.50 -0.3 5,129,584 - AO356_22975 0.50 -0.1 5,129,643 + AO356_22975 0.54 +0.3 5,129,643 + AO356_22975 0.54 -0.9 5,129,643 + AO356_22975 0.54 -0.8 5,129,644 - AO356_22975 0.54 -1.0 5,129,730 + AO356_22975 0.61 -0.7 5,129,730 + AO356_22975 0.61 -0.1 5,130,220 - +0.4 5,130,274 + +0.4 5,130,274 + +0.4 5,130,274 + +0.8 5,130,274 + +0.5 5,130,275 - -0.2 5,130,275 - +0.1 5,130,275 - +0.6 5,130,279 + -0.6 5,130,279 + +1.4 5,130,280 - -0.3 5,130,280 - -0.9 5,130,280 - -0.3 5,130,885 + AO356_22980 0.48 -0.1 5,130,885 + AO356_22980 0.48 +0.5 5,130,886 - AO356_22980 0.48 +0.6 5,131,032 + AO356_22980 0.59 -0.3
Or see this region's nucleotide sequence