Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22285 and AO356_22290 are separated by 167 nucleotides AO356_22290 and AO356_22295 overlap by 4 nucleotides
AO356_22285: AO356_22285 - LacI family transcriptional regulator, at 4,983,916 to 4,984,920
_22285
AO356_22290: AO356_22290 - oxidoreductase, at 4,985,088 to 4,986,263
_22290
AO356_22295: AO356_22295 - AP endonuclease, at 4,986,260 to 4,987,339
_22295
Position (kb)
4985
4986
4987 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4984.943 kb on + strand at 4984.944 kb on - strand at 4984.983 kb on + strand at 4984.983 kb on + strand at 4984.984 kb on - strand at 4985.048 kb on + strand at 4985.111 kb on - strand at 4985.111 kb on - strand at 4985.493 kb on + strand, within AO356_22290 at 4985.494 kb on - strand, within AO356_22290 at 4985.511 kb on + strand, within AO356_22290 at 4985.512 kb on - strand, within AO356_22290 at 4985.639 kb on + strand, within AO356_22290 at 4985.758 kb on + strand, within AO356_22290 at 4985.758 kb on + strand, within AO356_22290 at 4986.070 kb on - strand, within AO356_22290 at 4986.304 kb on + strand at 4986.304 kb on + strand at 4986.386 kb on + strand, within AO356_22295 at 4986.386 kb on + strand, within AO356_22295 at 4986.386 kb on + strand, within AO356_22295 at 4986.386 kb on + strand, within AO356_22295 at 4986.387 kb on - strand, within AO356_22295 at 4986.387 kb on - strand, within AO356_22295 at 4986.387 kb on - strand, within AO356_22295 at 4986.387 kb on - strand, within AO356_22295 at 4986.422 kb on + strand, within AO356_22295 at 4986.423 kb on - strand, within AO356_22295 at 4986.458 kb on + strand, within AO356_22295 at 4986.458 kb on + strand, within AO356_22295 at 4986.459 kb on - strand, within AO356_22295 at 4986.717 kb on - strand, within AO356_22295 at 4986.723 kb on - strand, within AO356_22295 at 4986.723 kb on - strand, within AO356_22295 at 4986.927 kb on - strand, within AO356_22295 at 4986.927 kb on - strand, within AO356_22295 at 4986.962 kb on + strand, within AO356_22295 at 4986.962 kb on + strand, within AO356_22295 at 4986.963 kb on - strand, within AO356_22295 at 4986.963 kb on - strand, within AO356_22295 at 4987.052 kb on + strand, within AO356_22295 at 4987.052 kb on + strand, within AO356_22295 at 4987.053 kb on - strand, within AO356_22295 at 4987.151 kb on + strand, within AO356_22295
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 4,984,943 + -0.9 4,984,944 - -0.1 4,984,983 + +0.7 4,984,983 + +0.3 4,984,984 - +1.0 4,985,048 + +0.3 4,985,111 - +0.3 4,985,111 - -0.2 4,985,493 + AO356_22290 0.34 +1.5 4,985,494 - AO356_22290 0.35 +0.5 4,985,511 + AO356_22290 0.36 +2.1 4,985,512 - AO356_22290 0.36 +1.3 4,985,639 + AO356_22290 0.47 -0.2 4,985,758 + AO356_22290 0.57 -0.1 4,985,758 + AO356_22290 0.57 +0.4 4,986,070 - AO356_22290 0.84 +0.8 4,986,304 + +0.3 4,986,304 + -1.0 4,986,386 + AO356_22295 0.12 -0.0 4,986,386 + AO356_22295 0.12 -1.0 4,986,386 + AO356_22295 0.12 -1.4 4,986,386 + AO356_22295 0.12 -0.0 4,986,387 - AO356_22295 0.12 +0.4 4,986,387 - AO356_22295 0.12 +0.4 4,986,387 - AO356_22295 0.12 +0.3 4,986,387 - AO356_22295 0.12 -0.2 4,986,422 + AO356_22295 0.15 -0.2 4,986,423 - AO356_22295 0.15 +0.8 4,986,458 + AO356_22295 0.18 -0.3 4,986,458 + AO356_22295 0.18 -2.1 4,986,459 - AO356_22295 0.18 -0.4 4,986,717 - AO356_22295 0.42 +0.1 4,986,723 - AO356_22295 0.43 -0.9 4,986,723 - AO356_22295 0.43 -1.1 4,986,927 - AO356_22295 0.62 +0.4 4,986,927 - AO356_22295 0.62 +0.2 4,986,962 + AO356_22295 0.65 +0.1 4,986,962 + AO356_22295 0.65 -0.3 4,986,963 - AO356_22295 0.65 +0.2 4,986,963 - AO356_22295 0.65 -0.9 4,987,052 + AO356_22295 0.73 +0.2 4,987,052 + AO356_22295 0.73 -0.2 4,987,053 - AO356_22295 0.73 -1.7 4,987,151 + AO356_22295 0.82 -0.7
Or see this region's nucleotide sequence