Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18950

Experiment: Cephalothin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18945 and AO356_18950 are separated by 112 nucleotidesAO356_18950 and AO356_18955 are separated by 170 nucleotides AO356_18945: AO356_18945 - histidine kinase, at 4,259,713 to 4,261,323 _18945 AO356_18950: AO356_18950 - 4'-phosphopantetheinyl transferase, at 4,261,436 to 4,262,170 _18950 AO356_18955: AO356_18955 - dienelactone hydrolase, at 4,262,341 to 4,263,132 _18955 Position (kb) 4261 4262 4263Strain fitness (log2 ratio) -2 -1 0 1at 4260.463 kb on + strand, within AO356_18945at 4260.464 kb on - strand, within AO356_18945at 4260.464 kb on - strand, within AO356_18945at 4260.464 kb on - strand, within AO356_18945at 4260.464 kb on - strand, within AO356_18945at 4260.464 kb on - strand, within AO356_18945at 4260.745 kb on - strand, within AO356_18945at 4260.748 kb on + strand, within AO356_18945at 4260.749 kb on - strand, within AO356_18945at 4260.749 kb on - strand, within AO356_18945at 4260.749 kb on - strand, within AO356_18945at 4260.749 kb on - strand, within AO356_18945at 4260.749 kb on - strand, within AO356_18945at 4260.811 kb on + strand, within AO356_18945at 4260.811 kb on + strand, within AO356_18945at 4260.811 kb on + strand, within AO356_18945at 4260.812 kb on - strand, within AO356_18945at 4260.812 kb on - strand, within AO356_18945at 4260.812 kb on - strand, within AO356_18945at 4260.935 kb on + strand, within AO356_18945at 4260.935 kb on + strand, within AO356_18945at 4260.935 kb on + strand, within AO356_18945at 4260.935 kb on + strand, within AO356_18945at 4260.936 kb on - strand, within AO356_18945at 4260.936 kb on - strand, within AO356_18945at 4260.936 kb on - strand, within AO356_18945at 4260.936 kb on - strand, within AO356_18945at 4260.936 kb on - strand, within AO356_18945at 4261.060 kb on + strand, within AO356_18945at 4261.060 kb on + strand, within AO356_18945at 4261.061 kb on - strand, within AO356_18945at 4262.335 kb on + strandat 4262.408 kb on + strandat 4262.408 kb on + strandat 4262.408 kb on + strandat 4262.408 kb on + strandat 4262.409 kb on - strandat 4262.409 kb on - strandat 4262.502 kb on + strand, within AO356_18955at 4262.503 kb on - strand, within AO356_18955at 4262.503 kb on - strand, within AO356_18955at 4262.503 kb on - strand, within AO356_18955at 4262.593 kb on + strand, within AO356_18955at 4262.593 kb on + strand, within AO356_18955at 4262.593 kb on + strand, within AO356_18955at 4262.593 kb on + strand, within AO356_18955at 4262.594 kb on - strand, within AO356_18955at 4262.594 kb on - strand, within AO356_18955at 4262.594 kb on - strand, within AO356_18955at 4262.675 kb on - strand, within AO356_18955at 4262.879 kb on + strand, within AO356_18955at 4262.879 kb on + strand, within AO356_18955at 4262.880 kb on - strand, within AO356_18955at 4262.880 kb on - strand, within AO356_18955at 4262.880 kb on - strand, within AO356_18955at 4262.880 kb on - strand, within AO356_18955at 4262.904 kb on - strand, within AO356_18955at 4262.942 kb on + strand, within AO356_18955at 4263.011 kb on + strand, within AO356_18955at 4263.011 kb on + strand, within AO356_18955at 4263.012 kb on - strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.021 kb on - strand, within AO356_18955at 4263.053 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.110 kb on - strandat 4263.110 kb on - strandat 4263.145 kb on + strandat 4263.145 kb on + strandat 4263.145 kb on + strandat 4263.145 kb on + strandat 4263.167 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml
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4,260,463 + AO356_18945 0.47 -1.0
4,260,464 - AO356_18945 0.47 +0.3
4,260,464 - AO356_18945 0.47 -0.1
4,260,464 - AO356_18945 0.47 +0.9
4,260,464 - AO356_18945 0.47 +0.7
4,260,464 - AO356_18945 0.47 -0.2
4,260,745 - AO356_18945 0.64 +0.7
4,260,748 + AO356_18945 0.64 +1.5
4,260,749 - AO356_18945 0.64 -0.1
4,260,749 - AO356_18945 0.64 +1.1
4,260,749 - AO356_18945 0.64 -0.8
4,260,749 - AO356_18945 0.64 +0.2
4,260,749 - AO356_18945 0.64 -0.0
4,260,811 + AO356_18945 0.68 -1.5
4,260,811 + AO356_18945 0.68 -0.4
4,260,811 + AO356_18945 0.68 -1.9
4,260,812 - AO356_18945 0.68 -0.2
4,260,812 - AO356_18945 0.68 -1.1
4,260,812 - AO356_18945 0.68 -0.1
4,260,935 + AO356_18945 0.76 -1.1
4,260,935 + AO356_18945 0.76 -0.1
4,260,935 + AO356_18945 0.76 -0.0
4,260,935 + AO356_18945 0.76 -0.4
4,260,936 - AO356_18945 0.76 +0.0
4,260,936 - AO356_18945 0.76 -0.1
4,260,936 - AO356_18945 0.76 -0.6
4,260,936 - AO356_18945 0.76 -0.4
4,260,936 - AO356_18945 0.76 +0.3
4,261,060 + AO356_18945 0.84 +0.1
4,261,060 + AO356_18945 0.84 +1.5
4,261,061 - AO356_18945 0.84 +1.0
4,262,335 + -0.4
4,262,408 + +0.7
4,262,408 + -0.7
4,262,408 + -1.2
4,262,408 + -0.2
4,262,409 - -0.1
4,262,409 - -0.1
4,262,502 + AO356_18955 0.20 +0.4
4,262,503 - AO356_18955 0.20 +0.6
4,262,503 - AO356_18955 0.20 -0.9
4,262,503 - AO356_18955 0.20 +0.3
4,262,593 + AO356_18955 0.32 -0.3
4,262,593 + AO356_18955 0.32 +0.1
4,262,593 + AO356_18955 0.32 +0.4
4,262,593 + AO356_18955 0.32 +1.4
4,262,594 - AO356_18955 0.32 -0.9
4,262,594 - AO356_18955 0.32 +0.7
4,262,594 - AO356_18955 0.32 +0.1
4,262,675 - AO356_18955 0.42 +0.5
4,262,879 + AO356_18955 0.68 +0.7
4,262,879 + AO356_18955 0.68 -1.3
4,262,880 - AO356_18955 0.68 +0.6
4,262,880 - AO356_18955 0.68 -0.0
4,262,880 - AO356_18955 0.68 +0.1
4,262,880 - AO356_18955 0.68 -0.4
4,262,904 - AO356_18955 0.71 -1.1
4,262,942 + AO356_18955 0.76 -0.6
4,263,011 + AO356_18955 0.85 -2.5
4,263,011 + AO356_18955 0.85 +0.2
4,263,012 - AO356_18955 0.85 +0.5
4,263,017 + AO356_18955 0.85 -0.3
4,263,017 + AO356_18955 0.85 -0.7
4,263,017 + AO356_18955 0.85 +0.1
4,263,017 + AO356_18955 0.85 +0.2
4,263,017 + AO356_18955 0.85 -0.9
4,263,018 - AO356_18955 0.85 +0.2
4,263,018 - AO356_18955 0.85 +0.5
4,263,018 - AO356_18955 0.85 -1.2
4,263,018 - AO356_18955 0.85 -0.8
4,263,018 - AO356_18955 0.85 +0.0
4,263,018 - AO356_18955 0.85 +0.5
4,263,018 - AO356_18955 0.85 -0.6
4,263,018 - AO356_18955 0.85 -1.1
4,263,018 - AO356_18955 0.85 -0.7
4,263,018 - AO356_18955 0.85 +0.2
4,263,021 - AO356_18955 0.86 +0.8
4,263,053 + -0.5
4,263,109 + -0.9
4,263,109 + +0.4
4,263,109 + -0.4
4,263,109 + -0.2
4,263,109 + -0.1
4,263,109 + -0.5
4,263,109 + +0.3
4,263,109 + -0.5
4,263,109 + +0.2
4,263,109 + +0.1
4,263,110 - -0.3
4,263,110 - +0.5
4,263,145 + -0.6
4,263,145 + -1.0
4,263,145 + -0.6
4,263,145 + -0.6
4,263,167 + -0.6

Or see this region's nucleotide sequence