Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14985 and AO356_14990 are separated by 145 nucleotides AO356_14990 and AO356_14995 are separated by 115 nucleotides
AO356_14985: AO356_14985 - TonB-dependent receptor, at 3,386,648 to 3,388,528
_14985
AO356_14990: AO356_14990 - 1-deoxy-D-xylulose-5-phosphate synthase, at 3,388,674 to 3,390,572
_14990
AO356_14995: AO356_14995 - geranyl transferase, at 3,390,688 to 3,391,575
_14995
AO356_15000: AO356_15000 - exodeoxyribonuclease VII small subunit, at 3,391,572 to 3,391,814
_15000
Position (kb)
3388
3389
3390
3391 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.714 kb on + strand, within AO356_14985 at 3387.714 kb on + strand, within AO356_14985 at 3387.775 kb on - strand, within AO356_14985 at 3387.775 kb on - strand, within AO356_14985 at 3387.775 kb on - strand, within AO356_14985 at 3387.898 kb on - strand, within AO356_14985 at 3388.104 kb on + strand, within AO356_14985 at 3388.104 kb on + strand, within AO356_14985 at 3388.105 kb on - strand, within AO356_14985 at 3388.105 kb on - strand, within AO356_14985 at 3388.105 kb on - strand, within AO356_14985 at 3388.254 kb on + strand, within AO356_14985 at 3388.254 kb on + strand, within AO356_14985 at 3388.254 kb on + strand, within AO356_14985 at 3388.255 kb on - strand, within AO356_14985 at 3388.675 kb on + strand at 3388.675 kb on + strand at 3388.676 kb on - strand at 3388.676 kb on - strand at 3388.676 kb on - strand at 3388.676 kb on - strand at 3388.676 kb on - strand at 3388.676 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.594 kb on - strand at 3390.594 kb on - strand at 3390.594 kb on - strand at 3390.594 kb on - strand at 3390.612 kb on - strand at 3390.612 kb on - strand at 3390.617 kb on - strand at 3390.617 kb on - strand at 3390.617 kb on - strand at 3390.617 kb on - strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.686 kb on + strand at 3390.687 kb on - strand at 3390.687 kb on - strand at 3390.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 3,387,681 + AO356_14985 0.55 +0.5 3,387,681 + AO356_14985 0.55 +2.5 3,387,681 + AO356_14985 0.55 +0.2 3,387,681 + AO356_14985 0.55 +0.6 3,387,681 + AO356_14985 0.55 -0.5 3,387,681 + AO356_14985 0.55 +1.0 3,387,681 + AO356_14985 0.55 -0.8 3,387,681 + AO356_14985 0.55 -0.5 3,387,682 - AO356_14985 0.55 -0.1 3,387,682 - AO356_14985 0.55 +0.2 3,387,682 - AO356_14985 0.55 +0.2 3,387,682 - AO356_14985 0.55 -0.2 3,387,682 - AO356_14985 0.55 +1.6 3,387,682 - AO356_14985 0.55 +0.9 3,387,682 - AO356_14985 0.55 +0.9 3,387,682 - AO356_14985 0.55 +0.4 3,387,682 - AO356_14985 0.55 +1.6 3,387,682 - AO356_14985 0.55 +0.6 3,387,682 - AO356_14985 0.55 +0.1 3,387,682 - AO356_14985 0.55 +0.6 3,387,714 + AO356_14985 0.57 -1.6 3,387,714 + AO356_14985 0.57 +0.9 3,387,775 - AO356_14985 0.60 +0.8 3,387,775 - AO356_14985 0.60 +0.5 3,387,775 - AO356_14985 0.60 -0.5 3,387,898 - AO356_14985 0.66 +1.5 3,388,104 + AO356_14985 0.77 -0.5 3,388,104 + AO356_14985 0.77 -2.0 3,388,105 - AO356_14985 0.77 +1.0 3,388,105 - AO356_14985 0.77 +0.4 3,388,105 - AO356_14985 0.77 +0.4 3,388,254 + AO356_14985 0.85 -0.1 3,388,254 + AO356_14985 0.85 -0.7 3,388,254 + AO356_14985 0.85 +1.2 3,388,255 - AO356_14985 0.85 -0.8 3,388,675 + +0.3 3,388,675 + +1.6 3,388,676 - -0.6 3,388,676 - -0.1 3,388,676 - +1.6 3,388,676 - +0.2 3,388,676 - +0.1 3,388,676 - +0.6 3,390,588 - +1.1 3,390,588 - +0.9 3,390,588 - +0.5 3,390,588 - -0.1 3,390,588 - +0.7 3,390,588 - -0.0 3,390,588 - +0.6 3,390,588 - +0.4 3,390,592 - -0.8 3,390,592 - -0.2 3,390,592 - -0.0 3,390,592 - +0.3 3,390,592 - -0.4 3,390,594 - -0.9 3,390,594 - +1.4 3,390,594 - -1.1 3,390,594 - -0.2 3,390,612 - +0.4 3,390,612 - +0.5 3,390,617 - -0.3 3,390,617 - +0.1 3,390,617 - +0.1 3,390,617 - -1.5 3,390,667 + +0.5 3,390,667 + -0.7 3,390,667 + -1.7 3,390,667 + +0.9 3,390,667 + +0.3 3,390,667 + -1.8 3,390,667 + +0.6 3,390,668 - -0.5 3,390,668 - -0.0 3,390,668 - +0.3 3,390,668 - -0.1 3,390,668 - +0.4 3,390,668 - -0.4 3,390,668 - -0.1 3,390,668 - +0.6 3,390,686 + +0.5 3,390,687 - -0.5 3,390,687 - -0.4 3,390,687 - +0.0
Or see this region's nucleotide sequence