Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13235

Experiment: Cephalothin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13230 and AO356_13235 are separated by 86 nucleotidesAO356_13235 and AO356_13240 are separated by 116 nucleotides AO356_13230: AO356_13230 - hypothetical protein, at 3,007,731 to 3,009,098 _13230 AO356_13235: AO356_13235 - diacylglycerol kinase, at 3,009,185 to 3,009,697 _13235 AO356_13240: AO356_13240 - L-cystine transporter tcyP, at 3,009,814 to 3,011,205 _13240 Position (kb) 3009 3010Strain fitness (log2 ratio) -1 0 1at 3008.311 kb on + strand, within AO356_13230at 3008.311 kb on + strand, within AO356_13230at 3008.312 kb on - strand, within AO356_13230at 3008.312 kb on - strand, within AO356_13230at 3008.312 kb on - strand, within AO356_13230at 3008.535 kb on + strand, within AO356_13230at 3008.535 kb on + strand, within AO356_13230at 3008.535 kb on + strand, within AO356_13230at 3008.536 kb on - strand, within AO356_13230at 3008.536 kb on - strand, within AO356_13230at 3008.536 kb on - strand, within AO356_13230at 3008.536 kb on - strand, within AO356_13230at 3008.536 kb on - strand, within AO356_13230at 3008.536 kb on - strand, within AO356_13230at 3009.172 kb on + strandat 3009.695 kb on + strandat 3009.695 kb on + strandat 3009.696 kb on - strandat 3009.696 kb on - strandat 3009.696 kb on - strandat 3010.188 kb on + strand, within AO356_13240at 3010.403 kb on + strand, within AO356_13240at 3010.403 kb on + strand, within AO356_13240at 3010.403 kb on + strand, within AO356_13240at 3010.404 kb on - strand, within AO356_13240at 3010.490 kb on + strand, within AO356_13240at 3010.491 kb on - strand, within AO356_13240

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml
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3,008,311 + AO356_13230 0.42 -0.3
3,008,311 + AO356_13230 0.42 -0.4
3,008,312 - AO356_13230 0.42 -0.8
3,008,312 - AO356_13230 0.42 -0.0
3,008,312 - AO356_13230 0.42 -0.3
3,008,535 + AO356_13230 0.59 -0.1
3,008,535 + AO356_13230 0.59 +0.0
3,008,535 + AO356_13230 0.59 -0.8
3,008,536 - AO356_13230 0.59 +0.3
3,008,536 - AO356_13230 0.59 +0.3
3,008,536 - AO356_13230 0.59 +0.8
3,008,536 - AO356_13230 0.59 +0.2
3,008,536 - AO356_13230 0.59 +0.5
3,008,536 - AO356_13230 0.59 +0.2
3,009,172 + -0.1
3,009,695 + +0.1
3,009,695 + +0.4
3,009,696 - +0.6
3,009,696 - +0.1
3,009,696 - -0.8
3,010,188 + AO356_13240 0.27 -0.1
3,010,403 + AO356_13240 0.42 -1.0
3,010,403 + AO356_13240 0.42 +0.9
3,010,403 + AO356_13240 0.42 +0.3
3,010,404 - AO356_13240 0.42 -0.4
3,010,490 + AO356_13240 0.49 +0.2
3,010,491 - AO356_13240 0.49 +1.3

Or see this region's nucleotide sequence