Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_11310 and AO356_11315 are separated by 13 nucleotides AO356_11315 and AO356_11320 are separated by 112 nucleotides
AO356_11310: AO356_11310 - coproporphyrinogen III oxidase, at 2,563,719 to 2,564,633
_11310
AO356_11315: AO356_11315 - shikimate dehydrogenase, at 2,564,647 to 2,565,468
_11315
AO356_11320: AO356_11320 - SulP family inorganic anion transporter, at 2,565,581 to 2,567,149
_11320
Position (kb)
2564
2565
2566 Strain fitness (log2 ratio)
-2
-1
0
1 at 2563.650 kb on + strand at 2563.651 kb on - strand at 2563.681 kb on + strand at 2563.683 kb on + strand at 2563.683 kb on + strand at 2563.683 kb on + strand at 2563.683 kb on + strand at 2563.683 kb on + strand at 2563.697 kb on + strand at 2563.697 kb on + strand at 2563.697 kb on + strand at 2564.641 kb on + strand at 2564.656 kb on + strand at 2564.656 kb on + strand at 2564.656 kb on + strand at 2564.656 kb on + strand at 2564.744 kb on - strand, within AO356_11315 at 2564.901 kb on + strand, within AO356_11315 at 2564.902 kb on - strand, within AO356_11315 at 2565.292 kb on + strand, within AO356_11315 at 2565.293 kb on - strand, within AO356_11315 at 2565.467 kb on - strand at 2565.467 kb on - strand at 2565.467 kb on - strand at 2565.478 kb on - strand at 2565.478 kb on - strand at 2565.478 kb on - strand at 2565.478 kb on - strand at 2565.478 kb on - strand at 2565.478 kb on - strand at 2565.564 kb on + strand at 2565.564 kb on + strand at 2565.564 kb on + strand at 2565.564 kb on + strand at 2565.565 kb on - strand at 2565.565 kb on - strand at 2565.673 kb on + strand at 2565.729 kb on + strand at 2565.729 kb on + strand at 2565.730 kb on - strand at 2565.794 kb on + strand, within AO356_11320 at 2565.794 kb on + strand, within AO356_11320 at 2565.794 kb on + strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.795 kb on - strand, within AO356_11320 at 2565.804 kb on + strand, within AO356_11320 at 2565.805 kb on - strand, within AO356_11320 at 2565.805 kb on - strand, within AO356_11320 at 2565.903 kb on + strand, within AO356_11320 at 2565.904 kb on - strand, within AO356_11320 at 2565.923 kb on + strand, within AO356_11320 at 2565.923 kb on + strand, within AO356_11320 at 2565.933 kb on + strand, within AO356_11320 at 2565.933 kb on + strand, within AO356_11320 at 2565.933 kb on + strand, within AO356_11320 at 2565.933 kb on + strand, within AO356_11320 at 2565.934 kb on - strand, within AO356_11320 at 2565.934 kb on - strand, within AO356_11320 at 2565.934 kb on - strand, within AO356_11320 at 2565.934 kb on - strand, within AO356_11320 at 2565.934 kb on - strand, within AO356_11320 at 2565.934 kb on - strand, within AO356_11320 at 2566.014 kb on + strand, within AO356_11320 at 2566.185 kb on + strand, within AO356_11320 at 2566.185 kb on + strand, within AO356_11320 at 2566.185 kb on + strand, within AO356_11320 at 2566.185 kb on + strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.186 kb on - strand, within AO356_11320 at 2566.307 kb on + strand, within AO356_11320 at 2566.307 kb on + strand, within AO356_11320 at 2566.308 kb on - strand, within AO356_11320 at 2566.308 kb on - strand, within AO356_11320 at 2566.308 kb on - strand, within AO356_11320 at 2566.308 kb on - strand, within AO356_11320 at 2566.308 kb on - strand, within AO356_11320 at 2566.308 kb on - strand, within AO356_11320
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 2,563,650 + +0.8 2,563,651 - +0.0 2,563,681 + +0.7 2,563,683 + -0.9 2,563,683 + -1.0 2,563,683 + -0.1 2,563,683 + -0.4 2,563,683 + -0.6 2,563,697 + -0.4 2,563,697 + -0.1 2,563,697 + -0.3 2,564,641 + -2.1 2,564,656 + +0.2 2,564,656 + +0.2 2,564,656 + +0.4 2,564,656 + +0.1 2,564,744 - AO356_11315 0.12 -1.6 2,564,901 + AO356_11315 0.31 -0.9 2,564,902 - AO356_11315 0.31 -1.8 2,565,292 + AO356_11315 0.78 +0.5 2,565,293 - AO356_11315 0.79 -0.7 2,565,467 - -1.2 2,565,467 - -1.7 2,565,467 - +0.1 2,565,478 - +0.3 2,565,478 - -1.0 2,565,478 - -0.6 2,565,478 - -0.3 2,565,478 - -0.2 2,565,478 - +0.7 2,565,564 + +0.2 2,565,564 + +0.6 2,565,564 + -0.1 2,565,564 + -0.4 2,565,565 - +0.2 2,565,565 - +0.7 2,565,673 + -0.3 2,565,729 + +0.2 2,565,729 + -0.0 2,565,730 - +0.8 2,565,794 + AO356_11320 0.14 -0.7 2,565,794 + AO356_11320 0.14 +1.4 2,565,794 + AO356_11320 0.14 +0.8 2,565,795 - AO356_11320 0.14 -0.5 2,565,795 - AO356_11320 0.14 -0.4 2,565,795 - AO356_11320 0.14 +0.4 2,565,795 - AO356_11320 0.14 -0.7 2,565,795 - AO356_11320 0.14 -0.3 2,565,795 - AO356_11320 0.14 +0.3 2,565,795 - AO356_11320 0.14 +0.8 2,565,795 - AO356_11320 0.14 -1.1 2,565,795 - AO356_11320 0.14 -0.4 2,565,795 - AO356_11320 0.14 +0.3 2,565,804 + AO356_11320 0.14 -0.9 2,565,805 - AO356_11320 0.14 -0.2 2,565,805 - AO356_11320 0.14 -1.6 2,565,903 + AO356_11320 0.21 +0.1 2,565,904 - AO356_11320 0.21 +0.3 2,565,923 + AO356_11320 0.22 +0.5 2,565,923 + AO356_11320 0.22 -0.3 2,565,933 + AO356_11320 0.22 +1.1 2,565,933 + AO356_11320 0.22 -0.0 2,565,933 + AO356_11320 0.22 -1.3 2,565,933 + AO356_11320 0.22 +0.6 2,565,934 - AO356_11320 0.22 +1.2 2,565,934 - AO356_11320 0.22 +0.2 2,565,934 - AO356_11320 0.22 +0.4 2,565,934 - AO356_11320 0.22 -1.1 2,565,934 - AO356_11320 0.22 -0.4 2,565,934 - AO356_11320 0.22 +0.5 2,566,014 + AO356_11320 0.28 +0.4 2,566,185 + AO356_11320 0.38 -0.3 2,566,185 + AO356_11320 0.38 +0.5 2,566,185 + AO356_11320 0.38 -0.6 2,566,185 + AO356_11320 0.38 +0.2 2,566,186 - AO356_11320 0.39 +1.5 2,566,186 - AO356_11320 0.39 -0.1 2,566,186 - AO356_11320 0.39 +0.8 2,566,186 - AO356_11320 0.39 +1.0 2,566,186 - AO356_11320 0.39 +0.9 2,566,186 - AO356_11320 0.39 +0.8 2,566,186 - AO356_11320 0.39 +0.5 2,566,307 + AO356_11320 0.46 +1.3 2,566,307 + AO356_11320 0.46 +0.2 2,566,308 - AO356_11320 0.46 -1.3 2,566,308 - AO356_11320 0.46 -0.2 2,566,308 - AO356_11320 0.46 +0.5 2,566,308 - AO356_11320 0.46 +0.1 2,566,308 - AO356_11320 0.46 -1.3 2,566,308 - AO356_11320 0.46 -0.2
Or see this region's nucleotide sequence