Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08330

Experiment: Cephalothin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08320 and AO356_08325 are separated by 57 nucleotidesAO356_08325 and AO356_08330 are separated by 82 nucleotidesAO356_08330 and AO356_08335 are separated by 191 nucleotides AO356_08320: AO356_08320 - copper resistance protein CopZ, at 1,870,129 to 1,870,608 _08320 AO356_08325: AO356_08325 - predicted copper homeostasis protein (from data), at 1,870,666 to 1,871,070 _08325 AO356_08330: AO356_08330 - TonB-dependent receptor, at 1,871,153 to 1,873,279 _08330 AO356_08335: AO356_08335 - peptidase, at 1,873,471 to 1,874,850 _08335 Position (kb) 1871 1872 1873 1874Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1870.195 kb on + strand, within AO356_08320at 1870.195 kb on + strand, within AO356_08320at 1870.195 kb on + strand, within AO356_08320at 1870.196 kb on - strand, within AO356_08320at 1870.196 kb on - strand, within AO356_08320at 1870.196 kb on - strand, within AO356_08320at 1870.196 kb on - strand, within AO356_08320at 1870.196 kb on - strand, within AO356_08320at 1870.270 kb on + strand, within AO356_08320at 1870.271 kb on - strand, within AO356_08320at 1870.271 kb on - strand, within AO356_08320at 1870.447 kb on + strand, within AO356_08320at 1870.606 kb on + strandat 1870.612 kb on + strandat 1870.984 kb on + strand, within AO356_08325at 1870.985 kb on - strand, within AO356_08325at 1870.985 kb on - strand, within AO356_08325at 1870.985 kb on - strand, within AO356_08325at 1870.985 kb on - strand, within AO356_08325at 1871.095 kb on + strandat 1871.095 kb on + strandat 1871.096 kb on - strandat 1871.096 kb on - strandat 1871.130 kb on + strandat 1871.130 kb on + strandat 1871.131 kb on - strandat 1871.427 kb on - strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.585 kb on - strand, within AO356_08330at 1871.585 kb on - strand, within AO356_08330at 1871.600 kb on + strand, within AO356_08330at 1871.600 kb on + strand, within AO356_08330at 1871.795 kb on + strand, within AO356_08330at 1871.795 kb on + strand, within AO356_08330at 1871.795 kb on + strand, within AO356_08330at 1871.795 kb on + strand, within AO356_08330at 1871.795 kb on + strand, within AO356_08330at 1871.795 kb on + strand, within AO356_08330at 1871.796 kb on - strand, within AO356_08330at 1871.799 kb on + strand, within AO356_08330at 1871.799 kb on + strand, within AO356_08330at 1871.799 kb on + strand, within AO356_08330at 1871.799 kb on + strand, within AO356_08330at 1871.799 kb on + strand, within AO356_08330at 1871.799 kb on + strand, within AO356_08330at 1871.800 kb on - strand, within AO356_08330at 1871.800 kb on - strand, within AO356_08330at 1871.800 kb on - strand, within AO356_08330at 1871.800 kb on - strand, within AO356_08330at 1871.800 kb on - strand, within AO356_08330at 1871.870 kb on + strand, within AO356_08330at 1871.967 kb on - strand, within AO356_08330at 1872.074 kb on + strand, within AO356_08330at 1872.074 kb on + strand, within AO356_08330at 1872.075 kb on - strand, within AO356_08330at 1872.075 kb on - strand, within AO356_08330at 1872.077 kb on + strand, within AO356_08330at 1872.077 kb on + strand, within AO356_08330at 1872.077 kb on + strand, within AO356_08330at 1872.077 kb on + strand, within AO356_08330at 1872.077 kb on + strand, within AO356_08330at 1872.077 kb on + strand, within AO356_08330at 1872.077 kb on + strand, within AO356_08330at 1872.077 kb on + strand, within AO356_08330at 1872.077 kb on + strand, within AO356_08330at 1872.078 kb on - strand, within AO356_08330at 1872.078 kb on - strand, within AO356_08330at 1872.078 kb on - strand, within AO356_08330at 1872.078 kb on - strand, within AO356_08330at 1872.078 kb on - strand, within AO356_08330at 1872.078 kb on - strand, within AO356_08330at 1872.083 kb on + strand, within AO356_08330at 1872.083 kb on + strand, within AO356_08330at 1872.084 kb on - strand, within AO356_08330at 1872.084 kb on - strand, within AO356_08330at 1872.084 kb on - strand, within AO356_08330at 1872.107 kb on + strand, within AO356_08330at 1872.107 kb on + strand, within AO356_08330at 1872.107 kb on + strand, within AO356_08330at 1872.107 kb on + strand, within AO356_08330at 1872.107 kb on + strand, within AO356_08330at 1872.107 kb on + strand, within AO356_08330at 1872.108 kb on - strand, within AO356_08330at 1872.108 kb on - strand, within AO356_08330at 1872.108 kb on - strand, within AO356_08330at 1872.108 kb on - strand, within AO356_08330at 1872.290 kb on + strand, within AO356_08330at 1872.290 kb on + strand, within AO356_08330at 1872.290 kb on + strand, within AO356_08330at 1872.290 kb on + strand, within AO356_08330at 1872.290 kb on + strand, within AO356_08330at 1872.290 kb on + strand, within AO356_08330at 1872.290 kb on + strand, within AO356_08330at 1872.291 kb on - strand, within AO356_08330at 1872.291 kb on - strand, within AO356_08330at 1872.291 kb on - strand, within AO356_08330at 1872.305 kb on + strand, within AO356_08330at 1872.305 kb on + strand, within AO356_08330at 1872.332 kb on + strand, within AO356_08330at 1872.332 kb on + strand, within AO356_08330at 1872.333 kb on - strand, within AO356_08330at 1872.333 kb on - strand, within AO356_08330at 1872.333 kb on - strand, within AO356_08330at 1872.552 kb on - strand, within AO356_08330at 1872.552 kb on - strand, within AO356_08330at 1872.689 kb on + strand, within AO356_08330at 1872.689 kb on + strand, within AO356_08330at 1872.689 kb on + strand, within AO356_08330at 1872.726 kb on - strand, within AO356_08330at 1872.726 kb on - strand, within AO356_08330at 1872.726 kb on - strand, within AO356_08330at 1872.746 kb on + strand, within AO356_08330at 1872.746 kb on + strand, within AO356_08330at 1872.746 kb on + strand, within AO356_08330at 1872.762 kb on - strand, within AO356_08330at 1872.842 kb on + strand, within AO356_08330at 1872.842 kb on + strand, within AO356_08330at 1872.885 kb on - strand, within AO356_08330at 1872.885 kb on - strand, within AO356_08330at 1872.963 kb on - strand, within AO356_08330at 1873.058 kb on + strand, within AO356_08330at 1873.164 kb on - strandat 1873.228 kb on + strandat 1873.229 kb on - strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.437 kb on + strandat 1873.438 kb on - strandat 1873.438 kb on - strandat 1873.438 kb on - strandat 1873.438 kb on - strandat 1873.438 kb on - strandat 1873.438 kb on - strandat 1873.438 kb on - strandat 1873.438 kb on - strandat 1873.438 kb on - strandat 1873.438 kb on - strandat 1873.438 kb on - strandat 1873.438 kb on - strandat 1873.495 kb on + strandat 1873.495 kb on + strandat 1873.495 kb on + strandat 1873.496 kb on - strandat 1873.523 kb on - strandat 1873.579 kb on + strandat 1873.579 kb on + strandat 1873.579 kb on + strandat 1873.579 kb on + strandat 1873.580 kb on - strandat 1873.580 kb on - strandat 1873.580 kb on - strandat 1873.612 kb on + strand, within AO356_08335at 1873.612 kb on + strand, within AO356_08335at 1873.613 kb on - strand, within AO356_08335at 1873.613 kb on - strand, within AO356_08335at 1873.674 kb on + strand, within AO356_08335at 1873.674 kb on + strand, within AO356_08335at 1873.674 kb on + strand, within AO356_08335at 1873.675 kb on - strand, within AO356_08335at 1873.675 kb on - strand, within AO356_08335at 1873.714 kb on + strand, within AO356_08335at 1873.714 kb on + strand, within AO356_08335at 1873.715 kb on - strand, within AO356_08335at 1873.951 kb on + strand, within AO356_08335at 1873.951 kb on + strand, within AO356_08335at 1873.952 kb on - strand, within AO356_08335at 1874.125 kb on + strand, within AO356_08335at 1874.237 kb on + strand, within AO356_08335at 1874.237 kb on + strand, within AO356_08335at 1874.237 kb on + strand, within AO356_08335at 1874.245 kb on - strand, within AO356_08335

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml
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1,870,195 + AO356_08320 0.14 +1.2
1,870,195 + AO356_08320 0.14 -0.2
1,870,195 + AO356_08320 0.14 +0.7
1,870,196 - AO356_08320 0.14 +0.5
1,870,196 - AO356_08320 0.14 +0.8
1,870,196 - AO356_08320 0.14 -0.7
1,870,196 - AO356_08320 0.14 -1.2
1,870,196 - AO356_08320 0.14 -2.2
1,870,270 + AO356_08320 0.29 -0.1
1,870,271 - AO356_08320 0.30 -1.5
1,870,271 - AO356_08320 0.30 +1.6
1,870,447 + AO356_08320 0.66 +0.7
1,870,606 + -0.3
1,870,612 + -0.6
1,870,984 + AO356_08325 0.79 -0.0
1,870,985 - AO356_08325 0.79 -1.6
1,870,985 - AO356_08325 0.79 -1.3
1,870,985 - AO356_08325 0.79 -0.2
1,870,985 - AO356_08325 0.79 -0.9
1,871,095 + +0.3
1,871,095 + +0.1
1,871,096 - +0.7
1,871,096 - -0.2
1,871,130 + -0.1
1,871,130 + +0.3
1,871,131 - -0.7
1,871,427 - AO356_08330 0.13 -1.4
1,871,582 + AO356_08330 0.20 -1.1
1,871,582 + AO356_08330 0.20 +0.3
1,871,582 + AO356_08330 0.20 +0.6
1,871,582 + AO356_08330 0.20 -1.6
1,871,582 + AO356_08330 0.20 -1.5
1,871,582 + AO356_08330 0.20 -1.5
1,871,582 + AO356_08330 0.20 +0.5
1,871,583 - AO356_08330 0.20 -0.4
1,871,583 - AO356_08330 0.20 -0.8
1,871,583 - AO356_08330 0.20 -2.7
1,871,583 - AO356_08330 0.20 -1.1
1,871,583 - AO356_08330 0.20 -0.9
1,871,583 - AO356_08330 0.20 -1.5
1,871,583 - AO356_08330 0.20 +0.5
1,871,583 - AO356_08330 0.20 -0.2
1,871,584 + AO356_08330 0.20 -1.1
1,871,584 + AO356_08330 0.20 -0.4
1,871,584 + AO356_08330 0.20 -1.7
1,871,584 + AO356_08330 0.20 -0.6
1,871,584 + AO356_08330 0.20 -1.4
1,871,584 + AO356_08330 0.20 +0.7
1,871,584 + AO356_08330 0.20 -0.3
1,871,584 + AO356_08330 0.20 -0.0
1,871,585 - AO356_08330 0.20 -0.8
1,871,585 - AO356_08330 0.20 -0.5
1,871,600 + AO356_08330 0.21 -0.7
1,871,600 + AO356_08330 0.21 +1.1
1,871,795 + AO356_08330 0.30 -0.6
1,871,795 + AO356_08330 0.30 +0.3
1,871,795 + AO356_08330 0.30 +1.3
1,871,795 + AO356_08330 0.30 -1.1
1,871,795 + AO356_08330 0.30 -0.7
1,871,795 + AO356_08330 0.30 -0.4
1,871,796 - AO356_08330 0.30 -2.2
1,871,799 + AO356_08330 0.30 -1.2
1,871,799 + AO356_08330 0.30 -0.2
1,871,799 + AO356_08330 0.30 -0.9
1,871,799 + AO356_08330 0.30 -0.1
1,871,799 + AO356_08330 0.30 -0.7
1,871,799 + AO356_08330 0.30 -1.3
1,871,800 - AO356_08330 0.30 -0.7
1,871,800 - AO356_08330 0.30 -1.7
1,871,800 - AO356_08330 0.30 -0.2
1,871,800 - AO356_08330 0.30 +0.9
1,871,800 - AO356_08330 0.30 -1.5
1,871,870 + AO356_08330 0.34 -0.2
1,871,967 - AO356_08330 0.38 -1.0
1,872,074 + AO356_08330 0.43 +0.8
1,872,074 + AO356_08330 0.43 +0.2
1,872,075 - AO356_08330 0.43 +0.2
1,872,075 - AO356_08330 0.43 +0.1
1,872,077 + AO356_08330 0.43 -0.9
1,872,077 + AO356_08330 0.43 +1.3
1,872,077 + AO356_08330 0.43 -0.9
1,872,077 + AO356_08330 0.43 +0.3
1,872,077 + AO356_08330 0.43 -0.4
1,872,077 + AO356_08330 0.43 -0.5
1,872,077 + AO356_08330 0.43 -0.1
1,872,077 + AO356_08330 0.43 +0.2
1,872,077 + AO356_08330 0.43 -1.9
1,872,078 - AO356_08330 0.43 +0.1
1,872,078 - AO356_08330 0.43 -0.5
1,872,078 - AO356_08330 0.43 -0.2
1,872,078 - AO356_08330 0.43 -0.1
1,872,078 - AO356_08330 0.43 -0.1
1,872,078 - AO356_08330 0.43 +0.4
1,872,083 + AO356_08330 0.44 +0.3
1,872,083 + AO356_08330 0.44 +0.0
1,872,084 - AO356_08330 0.44 +0.6
1,872,084 - AO356_08330 0.44 -1.1
1,872,084 - AO356_08330 0.44 -0.1
1,872,107 + AO356_08330 0.45 +0.3
1,872,107 + AO356_08330 0.45 +0.8
1,872,107 + AO356_08330 0.45 -0.4
1,872,107 + AO356_08330 0.45 -1.5
1,872,107 + AO356_08330 0.45 -0.1
1,872,107 + AO356_08330 0.45 -0.0
1,872,108 - AO356_08330 0.45 +0.4
1,872,108 - AO356_08330 0.45 +0.4
1,872,108 - AO356_08330 0.45 +0.2
1,872,108 - AO356_08330 0.45 -0.2
1,872,290 + AO356_08330 0.53 -2.5
1,872,290 + AO356_08330 0.53 +0.4
1,872,290 + AO356_08330 0.53 -1.1
1,872,290 + AO356_08330 0.53 +0.0
1,872,290 + AO356_08330 0.53 +0.3
1,872,290 + AO356_08330 0.53 -0.8
1,872,290 + AO356_08330 0.53 +0.9
1,872,291 - AO356_08330 0.54 -0.2
1,872,291 - AO356_08330 0.54 -1.7
1,872,291 - AO356_08330 0.54 +0.4
1,872,305 + AO356_08330 0.54 +0.3
1,872,305 + AO356_08330 0.54 -0.7
1,872,332 + AO356_08330 0.55 -0.5
1,872,332 + AO356_08330 0.55 -1.1
1,872,333 - AO356_08330 0.55 +0.0
1,872,333 - AO356_08330 0.55 +1.0
1,872,333 - AO356_08330 0.55 +1.3
1,872,552 - AO356_08330 0.66 +0.2
1,872,552 - AO356_08330 0.66 +0.9
1,872,689 + AO356_08330 0.72 -0.7
1,872,689 + AO356_08330 0.72 +1.5
1,872,689 + AO356_08330 0.72 -0.1
1,872,726 - AO356_08330 0.74 -2.8
1,872,726 - AO356_08330 0.74 -2.4
1,872,726 - AO356_08330 0.74 -0.5
1,872,746 + AO356_08330 0.75 +0.4
1,872,746 + AO356_08330 0.75 -1.4
1,872,746 + AO356_08330 0.75 +0.8
1,872,762 - AO356_08330 0.76 -1.3
1,872,842 + AO356_08330 0.79 +0.2
1,872,842 + AO356_08330 0.79 -0.4
1,872,885 - AO356_08330 0.81 -0.3
1,872,885 - AO356_08330 0.81 -0.9
1,872,963 - AO356_08330 0.85 -0.1
1,873,058 + AO356_08330 0.90 -1.5
1,873,164 - -0.2
1,873,228 + -1.6
1,873,229 - -1.4
1,873,437 + +1.7
1,873,437 + +0.1
1,873,437 + +1.6
1,873,437 + +0.7
1,873,437 + +1.4
1,873,437 + -0.4
1,873,437 + -0.0
1,873,437 + -0.0
1,873,437 + -0.0
1,873,437 + -0.4
1,873,437 + -0.1
1,873,437 + +0.4
1,873,437 + +0.5
1,873,437 + -0.7
1,873,437 + +0.9
1,873,437 + +1.5
1,873,437 + +0.1
1,873,437 + +0.4
1,873,437 + +1.1
1,873,437 + +1.2
1,873,437 + +0.1
1,873,437 + -1.2
1,873,437 + -0.0
1,873,437 + -0.2
1,873,437 + +0.8
1,873,438 - +1.7
1,873,438 - +0.6
1,873,438 - +1.7
1,873,438 - -2.5
1,873,438 - -0.9
1,873,438 - -1.1
1,873,438 - -0.3
1,873,438 - +0.5
1,873,438 - +0.9
1,873,438 - -0.9
1,873,438 - -0.0
1,873,438 - -0.2
1,873,495 + -0.5
1,873,495 + +0.1
1,873,495 + +0.3
1,873,496 - +0.2
1,873,523 - +0.3
1,873,579 + -1.0
1,873,579 + +0.8
1,873,579 + +0.7
1,873,579 + -0.2
1,873,580 - +2.2
1,873,580 - -0.3
1,873,580 - +1.3
1,873,612 + AO356_08335 0.10 +1.0
1,873,612 + AO356_08335 0.10 -0.1
1,873,613 - AO356_08335 0.10 +0.4
1,873,613 - AO356_08335 0.10 +0.2
1,873,674 + AO356_08335 0.15 +0.0
1,873,674 + AO356_08335 0.15 +0.6
1,873,674 + AO356_08335 0.15 +0.2
1,873,675 - AO356_08335 0.15 -0.4
1,873,675 - AO356_08335 0.15 -0.3
1,873,714 + AO356_08335 0.18 -0.4
1,873,714 + AO356_08335 0.18 -0.8
1,873,715 - AO356_08335 0.18 -1.2
1,873,951 + AO356_08335 0.35 +0.3
1,873,951 + AO356_08335 0.35 -0.4
1,873,952 - AO356_08335 0.35 -1.0
1,874,125 + AO356_08335 0.47 +0.7
1,874,237 + AO356_08335 0.56 -0.0
1,874,237 + AO356_08335 0.56 -0.3
1,874,237 + AO356_08335 0.56 -0.5
1,874,245 - AO356_08335 0.56 -0.3

Or see this region's nucleotide sequence