Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02680 and AO356_02685 are separated by 2 nucleotides AO356_02685 and AO356_02690 are separated by 271 nucleotides AO356_02690 and AO356_02695 overlap by 26 nucleotides AO356_02695 and AO356_02700 are separated by 3 nucleotides
AO356_02680: AO356_02680 - cell invasion protein SipB, at 588,325 to 590,094
_02680
AO356_02685: AO356_02685 - chaperone protein SicA, at 590,097 to 590,579
_02685
AO356_02690: AO356_02690 - type III secretion system protein SpaS, at 590,851 to 591,885
_02690
AO356_02695: AO356_02695 - type III secretion system protein SpaR, at 591,860 to 592,663
_02695
AO356_02700: AO356_02700 - type III secretion system protein SpaQ, at 592,667 to 592,921
_02700
Position (kb) 590
591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 589.885 kb on + strand, within AO356_02680 at 589.885 kb on + strand, within AO356_02680 at 589.885 kb on + strand, within AO356_02680 at 589.885 kb on + strand, within AO356_02680 at 589.885 kb on + strand, within AO356_02680 at 589.886 kb on - strand, within AO356_02680 at 589.886 kb on - strand, within AO356_02680 at 589.886 kb on - strand, within AO356_02680 at 589.886 kb on - strand, within AO356_02680 at 589.934 kb on + strand at 589.934 kb on + strand at 589.935 kb on - strand at 589.935 kb on - strand at 590.083 kb on + strand at 590.084 kb on - strand at 590.084 kb on - strand at 590.143 kb on + strand at 590.143 kb on + strand at 590.143 kb on + strand at 590.144 kb on - strand at 590.194 kb on + strand, within AO356_02685 at 590.195 kb on - strand, within AO356_02685 at 590.195 kb on - strand, within AO356_02685 at 590.254 kb on + strand, within AO356_02685 at 590.255 kb on - strand, within AO356_02685 at 590.303 kb on - strand, within AO356_02685 at 590.377 kb on + strand, within AO356_02685 at 590.377 kb on + strand, within AO356_02685 at 590.378 kb on - strand, within AO356_02685 at 590.378 kb on - strand, within AO356_02685 at 590.386 kb on + strand, within AO356_02685 at 590.386 kb on + strand, within AO356_02685 at 590.386 kb on + strand, within AO356_02685 at 590.440 kb on + strand, within AO356_02685 at 590.440 kb on + strand, within AO356_02685 at 590.440 kb on + strand, within AO356_02685 at 590.440 kb on + strand, within AO356_02685 at 590.440 kb on + strand, within AO356_02685 at 590.461 kb on + strand, within AO356_02685 at 590.461 kb on + strand, within AO356_02685 at 590.461 kb on + strand, within AO356_02685 at 590.462 kb on - strand, within AO356_02685 at 590.710 kb on - strand at 591.003 kb on - strand, within AO356_02690 at 591.544 kb on + strand, within AO356_02690 at 591.545 kb on - strand, within AO356_02690 at 591.671 kb on + strand, within AO356_02690 at 591.672 kb on - strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.975 kb on + strand, within AO356_02695 at 591.976 kb on - strand, within AO356_02695 at 591.976 kb on - strand, within AO356_02695 at 591.976 kb on - strand, within AO356_02695 at 592.203 kb on + strand, within AO356_02695 at 592.203 kb on + strand, within AO356_02695 at 592.494 kb on + strand, within AO356_02695 at 592.494 kb on + strand, within AO356_02695 at 592.668 kb on + strand at 592.885 kb on - strand, within AO356_02700 at 592.885 kb on - strand, within AO356_02700
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 589,885 + AO356_02680 0.88 -0.3 589,885 + AO356_02680 0.88 -0.3 589,885 + AO356_02680 0.88 -3.0 589,885 + AO356_02680 0.88 +0.1 589,885 + AO356_02680 0.88 -0.2 589,886 - AO356_02680 0.88 +0.2 589,886 - AO356_02680 0.88 +1.1 589,886 - AO356_02680 0.88 -0.9 589,886 - AO356_02680 0.88 -0.5 589,934 + +1.3 589,934 + -0.6 589,935 - +0.5 589,935 - -0.4 590,083 + +0.7 590,084 - +0.7 590,084 - -2.0 590,143 + +0.9 590,143 + +1.7 590,143 + +0.3 590,144 - +0.5 590,194 + AO356_02685 0.20 +0.3 590,195 - AO356_02685 0.20 +0.6 590,195 - AO356_02685 0.20 +0.4 590,254 + AO356_02685 0.33 +0.1 590,255 - AO356_02685 0.33 -1.1 590,303 - AO356_02685 0.43 +1.1 590,377 + AO356_02685 0.58 +0.8 590,377 + AO356_02685 0.58 +0.2 590,378 - AO356_02685 0.58 +1.0 590,378 - AO356_02685 0.58 +2.5 590,386 + AO356_02685 0.60 +0.2 590,386 + AO356_02685 0.60 +0.0 590,386 + AO356_02685 0.60 -0.1 590,440 + AO356_02685 0.71 -0.8 590,440 + AO356_02685 0.71 -0.0 590,440 + AO356_02685 0.71 +0.2 590,440 + AO356_02685 0.71 +0.3 590,440 + AO356_02685 0.71 +0.8 590,461 + AO356_02685 0.75 -0.0 590,461 + AO356_02685 0.75 +0.2 590,461 + AO356_02685 0.75 -0.0 590,462 - AO356_02685 0.76 -1.1 590,710 - +1.0 591,003 - AO356_02690 0.15 +0.0 591,544 + AO356_02690 0.67 +1.7 591,545 - AO356_02690 0.67 +0.1 591,671 + AO356_02690 0.79 +0.6 591,672 - AO356_02690 0.79 +0.4 591,758 + AO356_02690 0.88 -0.5 591,758 + AO356_02690 0.88 +0.6 591,758 + AO356_02690 0.88 -0.1 591,758 + AO356_02690 0.88 +0.9 591,759 - AO356_02690 0.88 +0.8 591,759 - AO356_02690 0.88 +0.1 591,759 - AO356_02690 0.88 +0.6 591,759 - AO356_02690 0.88 +0.0 591,759 - AO356_02690 0.88 +0.1 591,759 - AO356_02690 0.88 +0.2 591,759 - AO356_02690 0.88 +0.4 591,975 + AO356_02695 0.14 -0.6 591,976 - AO356_02695 0.14 -0.3 591,976 - AO356_02695 0.14 +0.2 591,976 - AO356_02695 0.14 -0.8 592,203 + AO356_02695 0.43 -1.3 592,203 + AO356_02695 0.43 -1.2 592,494 + AO356_02695 0.79 +0.7 592,494 + AO356_02695 0.79 -0.6 592,668 + -1.1 592,885 - AO356_02700 0.85 +0.0 592,885 - AO356_02700 0.85 -0.3
Or see this region's nucleotide sequence