Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01780 and AO356_01785 are separated by 114 nucleotides AO356_01785 and AO356_01790 are separated by 101 nucleotides AO356_01790 and AO356_01795 are separated by 469 nucleotides
AO356_01780: AO356_01780 - D-alanyl-D-alanine endopeptidase, at 400,039 to 400,977
_01780
AO356_01785: AO356_01785 - hypothetical protein, at 401,092 to 401,286
_01785
AO356_01790: AO356_01790 - hypothetical protein, at 401,388 to 402,065
_01790
AO356_01795: AO356_01795 - hypothetical protein, at 402,535 to 403,284
_01795
Position (kb) 401
402
403 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.391 kb on + strand, within AO356_01780 at 400.391 kb on + strand, within AO356_01780 at 400.392 kb on - strand, within AO356_01780 at 400.392 kb on - strand, within AO356_01780 at 400.392 kb on - strand, within AO356_01780 at 400.392 kb on - strand, within AO356_01780 at 400.525 kb on + strand, within AO356_01780 at 400.525 kb on + strand, within AO356_01780 at 400.526 kb on - strand, within AO356_01780 at 400.606 kb on + strand, within AO356_01780 at 400.606 kb on + strand, within AO356_01780 at 400.630 kb on - strand, within AO356_01780 at 400.669 kb on + strand, within AO356_01780 at 400.669 kb on + strand, within AO356_01780 at 400.670 kb on - strand, within AO356_01780 at 400.670 kb on - strand, within AO356_01780 at 400.834 kb on + strand, within AO356_01780 at 400.834 kb on + strand, within AO356_01780 at 400.834 kb on + strand, within AO356_01780 at 400.835 kb on - strand, within AO356_01780 at 400.918 kb on + strand at 400.918 kb on + strand at 400.919 kb on - strand at 400.919 kb on - strand at 400.919 kb on - strand at 400.976 kb on - strand at 401.089 kb on + strand at 401.089 kb on + strand at 401.094 kb on - strand at 401.094 kb on - strand at 401.120 kb on + strand, within AO356_01785 at 401.120 kb on + strand, within AO356_01785 at 401.120 kb on + strand, within AO356_01785 at 401.121 kb on - strand, within AO356_01785 at 401.121 kb on - strand, within AO356_01785 at 401.121 kb on - strand, within AO356_01785 at 401.265 kb on + strand, within AO356_01785 at 401.265 kb on + strand, within AO356_01785 at 401.266 kb on - strand, within AO356_01785 at 401.266 kb on - strand, within AO356_01785 at 401.266 kb on - strand, within AO356_01785 at 401.334 kb on - strand at 401.334 kb on - strand at 401.334 kb on - strand at 401.686 kb on + strand, within AO356_01790 at 401.686 kb on + strand, within AO356_01790 at 401.686 kb on + strand, within AO356_01790 at 401.755 kb on + strand, within AO356_01790 at 401.771 kb on - strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.793 kb on - strand, within AO356_01790 at 401.793 kb on - strand, within AO356_01790 at 401.793 kb on - strand, within AO356_01790 at 401.793 kb on - strand, within AO356_01790 at 401.880 kb on + strand, within AO356_01790 at 401.911 kb on + strand, within AO356_01790 at 401.912 kb on - strand, within AO356_01790 at 401.912 kb on - strand, within AO356_01790 at 401.926 kb on + strand, within AO356_01790 at 401.927 kb on - strand, within AO356_01790 at 401.927 kb on - strand, within AO356_01790 at 401.939 kb on + strand, within AO356_01790 at 401.939 kb on + strand, within AO356_01790 at 401.940 kb on - strand, within AO356_01790 at 401.983 kb on - strand, within AO356_01790 at 402.030 kb on + strand at 402.121 kb on + strand at 402.122 kb on - strand at 402.122 kb on - strand at 402.122 kb on - strand at 402.122 kb on - strand at 402.122 kb on - strand at 402.143 kb on - strand at 402.144 kb on + strand at 402.144 kb on + strand at 402.144 kb on + strand at 402.145 kb on - strand at 402.150 kb on + strand at 402.150 kb on + strand at 402.150 kb on + strand at 402.150 kb on + strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.162 kb on + strand at 402.173 kb on + strand at 402.174 kb on - strand at 402.174 kb on - strand at 402.233 kb on + strand at 402.233 kb on + strand at 402.234 kb on - strand at 402.247 kb on + strand at 402.247 kb on + strand at 402.248 kb on - strand at 402.248 kb on - strand at 402.276 kb on - strand at 402.276 kb on - strand at 402.321 kb on + strand at 402.322 kb on - strand at 402.322 kb on - strand at 402.623 kb on + strand, within AO356_01795 at 402.623 kb on + strand, within AO356_01795 at 402.623 kb on + strand, within AO356_01795 at 402.623 kb on + strand, within AO356_01795 at 402.623 kb on + strand, within AO356_01795 at 402.624 kb on - strand, within AO356_01795 at 402.624 kb on - strand, within AO356_01795 at 402.624 kb on - strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.640 kb on + strand, within AO356_01795 at 402.641 kb on - strand, within AO356_01795
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 400,391 + AO356_01780 0.37 +0.5 400,391 + AO356_01780 0.37 +0.4 400,392 - AO356_01780 0.38 -0.5 400,392 - AO356_01780 0.38 +0.4 400,392 - AO356_01780 0.38 -0.3 400,392 - AO356_01780 0.38 -1.3 400,525 + AO356_01780 0.52 +1.0 400,525 + AO356_01780 0.52 -2.5 400,526 - AO356_01780 0.52 +0.6 400,606 + AO356_01780 0.60 +0.5 400,606 + AO356_01780 0.60 -2.1 400,630 - AO356_01780 0.63 -0.2 400,669 + AO356_01780 0.67 -1.0 400,669 + AO356_01780 0.67 +0.0 400,670 - AO356_01780 0.67 +1.1 400,670 - AO356_01780 0.67 +1.6 400,834 + AO356_01780 0.85 -0.2 400,834 + AO356_01780 0.85 -0.2 400,834 + AO356_01780 0.85 -0.2 400,835 - AO356_01780 0.85 -0.0 400,918 + -0.3 400,918 + +0.8 400,919 - -0.0 400,919 - -1.0 400,919 - +0.2 400,976 - -1.5 401,089 + +0.7 401,089 + -0.8 401,094 - +0.0 401,094 - -0.7 401,120 + AO356_01785 0.14 -1.0 401,120 + AO356_01785 0.14 +0.4 401,120 + AO356_01785 0.14 -1.1 401,121 - AO356_01785 0.15 -0.4 401,121 - AO356_01785 0.15 +1.1 401,121 - AO356_01785 0.15 -0.2 401,265 + AO356_01785 0.89 +0.7 401,265 + AO356_01785 0.89 +0.1 401,266 - AO356_01785 0.89 -0.4 401,266 - AO356_01785 0.89 -0.6 401,266 - AO356_01785 0.89 -0.1 401,334 - +0.5 401,334 - +1.2 401,334 - -0.3 401,686 + AO356_01790 0.44 -0.0 401,686 + AO356_01790 0.44 +0.8 401,686 + AO356_01790 0.44 -0.4 401,755 + AO356_01790 0.54 +0.7 401,771 - AO356_01790 0.56 +0.2 401,792 + AO356_01790 0.60 -0.5 401,792 + AO356_01790 0.60 -0.5 401,792 + AO356_01790 0.60 +0.4 401,792 + AO356_01790 0.60 -1.6 401,792 + AO356_01790 0.60 +0.9 401,792 + AO356_01790 0.60 -1.8 401,793 - AO356_01790 0.60 +1.1 401,793 - AO356_01790 0.60 +0.1 401,793 - AO356_01790 0.60 -1.4 401,793 - AO356_01790 0.60 -0.6 401,880 + AO356_01790 0.73 -0.3 401,911 + AO356_01790 0.77 -0.2 401,912 - AO356_01790 0.77 -0.3 401,912 - AO356_01790 0.77 -1.0 401,926 + AO356_01790 0.79 -0.6 401,927 - AO356_01790 0.79 -1.9 401,927 - AO356_01790 0.79 +0.3 401,939 + AO356_01790 0.81 -0.2 401,939 + AO356_01790 0.81 -0.2 401,940 - AO356_01790 0.81 +1.3 401,983 - AO356_01790 0.88 +0.1 402,030 + +0.6 402,121 + +0.9 402,122 - -2.1 402,122 - +0.2 402,122 - -1.4 402,122 - +0.6 402,122 - -0.4 402,143 - -0.5 402,144 + +1.6 402,144 + -0.8 402,144 + -0.9 402,145 - -1.4 402,150 + -1.2 402,150 + +0.4 402,150 + +1.3 402,150 + -0.4 402,151 - -0.1 402,151 - +1.2 402,151 - -1.0 402,151 - -2.0 402,151 - +0.4 402,151 - -0.4 402,151 - +0.3 402,162 + +0.5 402,173 + +0.1 402,174 - -0.2 402,174 - +0.5 402,233 + -0.5 402,233 + -1.2 402,234 - +0.2 402,247 + -1.4 402,247 + -0.1 402,248 - -0.2 402,248 - -0.6 402,276 - +0.3 402,276 - -0.5 402,321 + -0.1 402,322 - +0.7 402,322 - +0.4 402,623 + AO356_01795 0.12 +1.0 402,623 + AO356_01795 0.12 -0.9 402,623 + AO356_01795 0.12 -0.3 402,623 + AO356_01795 0.12 -1.1 402,623 + AO356_01795 0.12 +0.5 402,624 - AO356_01795 0.12 +0.6 402,624 - AO356_01795 0.12 -0.0 402,624 - AO356_01795 0.12 -0.1 402,627 + AO356_01795 0.12 -0.8 402,627 + AO356_01795 0.12 +0.4 402,627 + AO356_01795 0.12 -1.3 402,627 + AO356_01795 0.12 +0.5 402,627 + AO356_01795 0.12 +0.6 402,628 - AO356_01795 0.12 +0.6 402,628 - AO356_01795 0.12 +0.1 402,628 - AO356_01795 0.12 -0.7 402,628 - AO356_01795 0.12 -0.2 402,628 - AO356_01795 0.12 +0.3 402,628 - AO356_01795 0.12 +2.3 402,628 - AO356_01795 0.12 -1.3 402,629 + AO356_01795 0.13 -0.6 402,629 + AO356_01795 0.13 +0.3 402,629 + AO356_01795 0.13 +0.4 402,629 + AO356_01795 0.13 -0.4 402,629 + AO356_01795 0.13 +0.7 402,629 + AO356_01795 0.13 +1.3 402,629 + AO356_01795 0.13 -0.2 402,630 - AO356_01795 0.13 -0.5 402,630 - AO356_01795 0.13 -0.8 402,630 - AO356_01795 0.13 -0.5 402,630 - AO356_01795 0.13 -0.8 402,630 - AO356_01795 0.13 -0.2 402,630 - AO356_01795 0.13 -0.9 402,640 + AO356_01795 0.14 +0.2 402,641 - AO356_01795 0.14 -1.3
Or see this region's nucleotide sequence