Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01745 and AO356_01750 are separated by 107 nucleotides AO356_01750 and AO356_01755 are separated by 93 nucleotides AO356_01755 and AO356_01760 are separated by 422 nucleotides AO356_01760 and AO356_01765 are separated by 58 nucleotides AO356_01765 and AO356_01770 are separated by 41 nucleotides
AO356_01745: AO356_01745 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 394,376 to 395,659
_01745
AO356_01750: AO356_01750 - ATP-dependent Clp protease proteolytic subunit, at 395,767 to 396,408
_01750
AO356_01755: AO356_01755 - trigger factor, at 396,502 to 397,812
_01755
AO356_01760: AO356_01760 - tRNA-Leu, at 398,235 to 398,319
_01760
AO356_01765: AO356_01765 - tRNA-His, at 398,378 to 398,453
_01765
AO356_01770: AO356_01770 - tRNA-Arg, at 398,495 to 398,571
_01770
Position (kb)
396
397
398 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 395.616 kb on + strand at 395.617 kb on - strand at 395.617 kb on - strand at 395.768 kb on + strand at 395.768 kb on + strand at 395.769 kb on - strand at 396.129 kb on - strand, within AO356_01750 at 396.173 kb on + strand, within AO356_01750 at 396.173 kb on + strand, within AO356_01750 at 396.173 kb on + strand, within AO356_01750 at 396.245 kb on + strand, within AO356_01750 at 396.246 kb on - strand, within AO356_01750 at 396.246 kb on - strand, within AO356_01750 at 396.299 kb on + strand, within AO356_01750 at 396.299 kb on + strand, within AO356_01750 at 396.299 kb on + strand, within AO356_01750 at 396.300 kb on - strand, within AO356_01750 at 396.429 kb on + strand at 396.430 kb on - strand at 396.433 kb on + strand at 396.433 kb on + strand at 396.434 kb on - strand at 396.434 kb on - strand at 396.434 kb on - strand at 396.434 kb on - strand at 396.445 kb on - strand at 396.450 kb on + strand at 396.450 kb on + strand at 396.483 kb on - strand at 396.483 kb on - strand at 396.483 kb on - strand at 396.571 kb on - strand at 396.589 kb on - strand at 396.651 kb on - strand, within AO356_01755 at 396.651 kb on - strand, within AO356_01755 at 397.152 kb on - strand, within AO356_01755 at 397.530 kb on + strand, within AO356_01755 at 397.587 kb on - strand, within AO356_01755 at 397.587 kb on - strand, within AO356_01755 at 397.791 kb on + strand at 397.792 kb on - strand at 397.878 kb on + strand at 397.878 kb on + strand at 397.878 kb on + strand at 397.879 kb on - strand at 397.879 kb on - strand at 397.879 kb on - strand at 397.879 kb on - strand at 397.879 kb on - strand at 397.881 kb on + strand at 397.881 kb on + strand at 397.882 kb on - strand at 397.906 kb on - strand at 397.906 kb on - strand at 397.978 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.017 kb on - strand at 398.017 kb on - strand at 398.017 kb on - strand at 398.017 kb on - strand at 398.017 kb on - strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.019 kb on - strand at 398.019 kb on - strand at 398.019 kb on - strand at 398.019 kb on - strand at 398.020 kb on + strand at 398.020 kb on + strand at 398.020 kb on + strand at 398.020 kb on + strand at 398.020 kb on + strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.022 kb on + strand at 398.022 kb on + strand at 398.022 kb on + strand at 398.022 kb on + strand at 398.022 kb on + strand at 398.022 kb on + strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.078 kb on + strand at 398.078 kb on + strand at 398.197 kb on + strand at 398.220 kb on - strand at 398.233 kb on + strand at 398.233 kb on + strand at 398.233 kb on + strand at 398.234 kb on - strand at 398.234 kb on - strand at 398.234 kb on - strand at 398.234 kb on - strand at 398.234 kb on - strand at 398.355 kb on - strand at 398.355 kb on - strand at 398.372 kb on - strand at 398.473 kb on - strand at 398.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 395,616 + -2.2 395,617 - -1.8 395,617 - +0.2 395,768 + +0.2 395,768 + -0.7 395,769 - -0.1 396,129 - AO356_01750 0.56 -1.0 396,173 + AO356_01750 0.63 +0.3 396,173 + AO356_01750 0.63 +0.9 396,173 + AO356_01750 0.63 -2.0 396,245 + AO356_01750 0.74 -2.1 396,246 - AO356_01750 0.75 -1.4 396,246 - AO356_01750 0.75 -1.4 396,299 + AO356_01750 0.83 -0.4 396,299 + AO356_01750 0.83 -0.7 396,299 + AO356_01750 0.83 -1.2 396,300 - AO356_01750 0.83 +0.6 396,429 + -0.8 396,430 - -0.6 396,433 + -1.2 396,433 + +1.2 396,434 - -0.5 396,434 - -0.5 396,434 - -0.5 396,434 - +0.3 396,445 - +1.0 396,450 + -0.4 396,450 + +0.3 396,483 - -2.0 396,483 - +0.0 396,483 - -0.7 396,571 - +1.6 396,589 - -0.4 396,651 - AO356_01755 0.11 -1.8 396,651 - AO356_01755 0.11 -1.0 397,152 - AO356_01755 0.50 -0.8 397,530 + AO356_01755 0.78 -1.4 397,587 - AO356_01755 0.83 -0.1 397,587 - AO356_01755 0.83 +0.2 397,791 + -0.4 397,792 - -0.2 397,878 + -1.2 397,878 + +1.2 397,878 + -1.1 397,879 - -0.5 397,879 - +0.6 397,879 - +1.0 397,879 - -0.2 397,879 - -1.8 397,881 + -0.4 397,881 + +1.3 397,882 - +2.3 397,906 - +0.0 397,906 - -0.1 397,978 + -0.6 398,016 + -0.5 398,016 + +0.6 398,016 + +0.2 398,016 + -0.2 398,016 + -1.4 398,016 + -0.6 398,016 + -0.4 398,016 + -0.5 398,017 - +0.9 398,017 - +0.1 398,017 - +0.1 398,017 - -0.5 398,017 - +0.7 398,018 + -1.0 398,018 + -0.9 398,018 + +0.4 398,018 + +0.2 398,018 + +0.3 398,018 + +0.8 398,018 + -1.0 398,018 + +1.3 398,019 - -0.9 398,019 - +0.8 398,019 - -1.2 398,019 - +0.3 398,020 + +0.3 398,020 + +0.8 398,020 + -0.2 398,020 + +0.0 398,020 + +0.3 398,021 - -1.0 398,021 - +0.5 398,021 - +0.1 398,021 - -2.1 398,021 - +0.3 398,021 - +0.9 398,021 - -0.2 398,021 - +0.5 398,021 - +0.5 398,021 - +0.2 398,022 + -0.1 398,022 + +0.9 398,022 + -1.3 398,022 + +0.1 398,022 + -0.9 398,022 + -0.5 398,023 - +0.3 398,023 - +0.2 398,023 - -0.1 398,023 - -2.0 398,023 - +0.4 398,023 - -0.1 398,023 - -0.6 398,023 - -2.3 398,023 - -0.4 398,078 + -0.4 398,078 + +0.2 398,197 + -0.6 398,220 - +0.6 398,233 + -0.2 398,233 + -1.8 398,233 + -2.6 398,234 - +0.2 398,234 - -0.4 398,234 - +1.0 398,234 - +0.8 398,234 - -0.6 398,355 - +0.3 398,355 - -0.6 398,372 - +0.3 398,473 - -1.4 398,606 - -1.2
Or see this region's nucleotide sequence