Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01720 and AO356_01725 are separated by 344 nucleotides AO356_01725 and AO356_01730 are separated by 102 nucleotides AO356_01730 and AO356_01735 are separated by 47 nucleotides AO356_01735 and AO356_01740 are separated by 149 nucleotides
AO356_01720: AO356_01720 - hypothetical protein, at 388,062 to 388,955
_01720
AO356_01725: AO356_01725 - peptidylprolyl isomerase, at 389,300 to 391,171
_01725
AO356_01730: AO356_01730 - tRNA-Ser, at 391,274 to 391,348
_01730
AO356_01735: AO356_01735 - DNA-binding protein HU, at 391,396 to 391,668
_01735
AO356_01740: AO356_01740 - DNA-binding protein, at 391,818 to 394,214
_01740
Position (kb) 389
390
391
392 Strain fitness (log2 ratio) -2
-1
0
1 at 388.471 kb on + strand, within AO356_01720 at 388.471 kb on + strand, within AO356_01720 at 388.471 kb on + strand, within AO356_01720 at 388.471 kb on + strand, within AO356_01720 at 388.472 kb on - strand, within AO356_01720 at 388.472 kb on - strand, within AO356_01720 at 388.472 kb on - strand, within AO356_01720 at 388.472 kb on - strand, within AO356_01720 at 388.472 kb on - strand, within AO356_01720 at 388.762 kb on + strand, within AO356_01720 at 388.763 kb on - strand, within AO356_01720 at 388.763 kb on - strand, within AO356_01720 at 388.822 kb on + strand, within AO356_01720 at 388.868 kb on - strand at 388.868 kb on - strand at 388.986 kb on + strand at 388.986 kb on + strand at 389.123 kb on + strand at 389.180 kb on + strand at 389.180 kb on + strand at 389.181 kb on - strand at 389.181 kb on - strand at 389.181 kb on - strand at 389.383 kb on - strand at 389.383 kb on - strand at 389.629 kb on + strand, within AO356_01725 at 390.163 kb on - strand, within AO356_01725 at 390.163 kb on - strand, within AO356_01725 at 391.204 kb on - strand at 391.225 kb on - strand at 391.271 kb on - strand at 391.672 kb on - strand at 391.688 kb on - strand at 391.688 kb on - strand at 391.754 kb on - strand at 391.754 kb on - strand at 391.754 kb on - strand at 391.766 kb on - strand at 391.766 kb on - strand at 391.768 kb on - strand at 391.817 kb on - strand at 391.817 kb on - strand at 391.817 kb on - strand at 391.820 kb on - strand at 391.913 kb on - strand at 391.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 388,471 + AO356_01720 0.46 -0.5 388,471 + AO356_01720 0.46 +0.2 388,471 + AO356_01720 0.46 -0.4 388,471 + AO356_01720 0.46 +1.4 388,472 - AO356_01720 0.46 +0.4 388,472 - AO356_01720 0.46 -0.8 388,472 - AO356_01720 0.46 -0.8 388,472 - AO356_01720 0.46 -0.3 388,472 - AO356_01720 0.46 -0.1 388,762 + AO356_01720 0.78 +0.2 388,763 - AO356_01720 0.78 -0.9 388,763 - AO356_01720 0.78 +1.6 388,822 + AO356_01720 0.85 -1.0 388,868 - +0.4 388,868 - -0.8 388,986 + -0.5 388,986 + -0.6 389,123 + +1.0 389,180 + -1.0 389,180 + +1.4 389,181 - -0.9 389,181 - +0.3 389,181 - +0.6 389,383 - -2.3 389,383 - -0.7 389,629 + AO356_01725 0.18 +0.3 390,163 - AO356_01725 0.46 +0.9 390,163 - AO356_01725 0.46 +0.4 391,204 - -1.0 391,225 - -0.4 391,271 - -0.6 391,672 - +0.0 391,688 - -1.1 391,688 - -0.7 391,754 - -0.4 391,754 - +0.9 391,754 - -0.5 391,766 - -0.1 391,766 - -0.6 391,768 - -0.5 391,817 - -2.4 391,817 - -0.3 391,817 - -0.0 391,820 - -0.1 391,913 - -1.6 391,950 - -0.4
Or see this region's nucleotide sequence