Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01425 and AO356_01430 are separated by 13 nucleotides AO356_01430 and AO356_01435 are separated by 142 nucleotides AO356_01435 and AO356_01440 are separated by 98 nucleotides AO356_01440 and AO356_01445 are separated by 76 nucleotides
AO356_01425: AO356_01425 - LysR family transcriptional regulator, at 326,848 to 327,780
_01425
AO356_01430: AO356_01430 - NADP oxidoreductase, at 327,794 to 328,396
_01430
AO356_01435: AO356_01435 - LysR family transcriptional regulator, at 328,539 to 329,468
_01435
AO356_01440: AO356_01440 - hypothetical protein, at 329,567 to 330,331
_01440
AO356_01445: AO356_01445 - hypothetical protein, at 330,408 to 330,995
_01445
Position (kb) 328
329
330 Strain fitness (log2 ratio) -2
-1
0
1 at 327.644 kb on - strand, within AO356_01425 at 327.881 kb on + strand, within AO356_01430 at 327.882 kb on - strand, within AO356_01430 at 328.316 kb on + strand, within AO356_01430 at 328.316 kb on + strand, within AO356_01430 at 328.316 kb on + strand, within AO356_01430 at 328.317 kb on - strand, within AO356_01430 at 328.317 kb on - strand, within AO356_01430 at 328.317 kb on - strand, within AO356_01430 at 328.428 kb on + strand at 328.521 kb on + strand at 328.521 kb on + strand at 328.521 kb on + strand at 328.522 kb on - strand at 328.525 kb on - strand at 328.858 kb on + strand, within AO356_01435 at 329.049 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.329 kb on - strand, within AO356_01435 at 329.329 kb on - strand, within AO356_01435 at 329.329 kb on - strand, within AO356_01435 at 329.356 kb on - strand, within AO356_01435 at 329.356 kb on - strand, within AO356_01435 at 329.358 kb on + strand, within AO356_01435 at 329.359 kb on - strand, within AO356_01435 at 329.359 kb on - strand, within AO356_01435 at 329.533 kb on - strand at 329.789 kb on + strand, within AO356_01440 at 329.789 kb on + strand, within AO356_01440 at 329.789 kb on + strand, within AO356_01440 at 329.790 kb on - strand, within AO356_01440 at 329.790 kb on - strand, within AO356_01440 at 329.939 kb on + strand, within AO356_01440 at 329.940 kb on - strand, within AO356_01440 at 329.940 kb on - strand, within AO356_01440 at 330.003 kb on + strand, within AO356_01440 at 330.004 kb on - strand, within AO356_01440 at 330.004 kb on - strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 327,644 - AO356_01425 0.85 +0.5 327,881 + AO356_01430 0.14 -0.5 327,882 - AO356_01430 0.15 -0.5 328,316 + AO356_01430 0.87 -0.2 328,316 + AO356_01430 0.87 +0.2 328,316 + AO356_01430 0.87 -0.7 328,317 - AO356_01430 0.87 +0.2 328,317 - AO356_01430 0.87 +0.5 328,317 - AO356_01430 0.87 -0.0 328,428 + +0.5 328,521 + -0.0 328,521 + +0.4 328,521 + -0.0 328,522 - +1.3 328,525 - -1.4 328,858 + AO356_01435 0.34 +0.2 329,049 + AO356_01435 0.55 +0.4 329,328 + AO356_01435 0.85 -0.5 329,328 + AO356_01435 0.85 -0.4 329,328 + AO356_01435 0.85 -0.6 329,328 + AO356_01435 0.85 +0.4 329,329 - AO356_01435 0.85 -0.2 329,329 - AO356_01435 0.85 -0.6 329,329 - AO356_01435 0.85 +0.6 329,356 - AO356_01435 0.88 -0.8 329,356 - AO356_01435 0.88 -1.0 329,358 + AO356_01435 0.88 +0.6 329,359 - AO356_01435 0.88 -1.1 329,359 - AO356_01435 0.88 +0.6 329,533 - +0.3 329,789 + AO356_01440 0.29 -0.2 329,789 + AO356_01440 0.29 -0.1 329,789 + AO356_01440 0.29 +0.3 329,790 - AO356_01440 0.29 -0.4 329,790 - AO356_01440 0.29 -0.5 329,939 + AO356_01440 0.49 -1.4 329,940 - AO356_01440 0.49 -0.1 329,940 - AO356_01440 0.49 +0.8 330,003 + AO356_01440 0.57 -1.0 330,004 - AO356_01440 0.57 -1.2 330,004 - AO356_01440 0.57 +1.0 330,188 + AO356_01440 0.81 -0.6 330,188 + AO356_01440 0.81 +0.5 330,188 + AO356_01440 0.81 -0.1 330,188 + AO356_01440 0.81 +0.3 330,188 + AO356_01440 0.81 +0.3 330,189 - AO356_01440 0.81 -0.7 330,189 - AO356_01440 0.81 -0.8 330,189 - AO356_01440 0.81 +0.1 330,189 - AO356_01440 0.81 +0.5 330,189 - AO356_01440 0.81 -0.0 330,189 - AO356_01440 0.81 -2.6 330,423 - -0.2
Or see this region's nucleotide sequence