Strain Fitness in Shewanella loihica PV-4 around Shew_3305

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3304 and Shew_3305 are separated by 165 nucleotidesShew_3305 and Shew_3306 are separated by 33 nucleotides Shew_3304: Shew_3304 - ABC transporter-related protein (RefSeq), at 3,946,077 to 3,946,955 _3304 Shew_3305: Shew_3305 - CaCA family Na(+)/Ca(+) antiporter (RefSeq), at 3,947,121 to 3,948,080 _3305 Shew_3306: Shew_3306 - KpsF/GutQ family protein (RefSeq), at 3,948,114 to 3,949,091 _3306 Position (kb) 3947 3948 3949Strain fitness (log2 ratio) -1 0 1at 3946.299 kb on + strand, within Shew_3304at 3946.754 kb on - strand, within Shew_3304at 3946.917 kb on - strandat 3946.969 kb on - strandat 3947.070 kb on + strandat 3947.165 kb on + strandat 3947.694 kb on + strand, within Shew_3305at 3947.770 kb on + strand, within Shew_3305

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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3,946,299 + Shew_3304 0.25 -0.4
3,946,754 - Shew_3304 0.77 -0.5
3,946,917 - -0.3
3,946,969 - -0.1
3,947,070 + +0.4
3,947,165 + +0.2
3,947,694 + Shew_3305 0.60 +0.3
3,947,770 + Shew_3305 0.68 +1.3

Or see this region's nucleotide sequence