Strain Fitness in Shewanella loihica PV-4 around Shew_2727

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2725 and Shew_2726 are separated by 330 nucleotidesShew_2726 and Shew_2727 are separated by 167 nucleotidesShew_2727 and Shew_2728 are separated by 12 nucleotides Shew_2725: Shew_2725 - ribokinase-like domain-containing protein (RefSeq), at 3,224,529 to 3,225,620 _2725 Shew_2726: Shew_2726 - hypothetical protein (RefSeq), at 3,225,951 to 3,226,403 _2726 Shew_2727: Shew_2727 - hypothetical protein (RefSeq), at 3,226,571 to 3,227,269 _2727 Shew_2728: Shew_2728 - hypothetical protein (RefSeq), at 3,227,282 to 3,228,163 _2728 Position (kb) 3226 3227 3228Strain fitness (log2 ratio) -1 0 1at 3225.646 kb on - strandat 3225.910 kb on + strandat 3226.131 kb on - strand, within Shew_2726at 3226.168 kb on - strand, within Shew_2726at 3226.168 kb on - strand, within Shew_2726at 3226.168 kb on - strand, within Shew_2726at 3226.168 kb on - strand, within Shew_2726at 3226.767 kb on - strand, within Shew_2727at 3227.013 kb on - strand, within Shew_2727at 3227.043 kb on - strand, within Shew_2727at 3227.168 kb on - strand, within Shew_2727at 3227.574 kb on - strand, within Shew_2728at 3227.657 kb on + strand, within Shew_2728at 3227.999 kb on + strand, within Shew_2728at 3228.084 kb on - strandat 3228.107 kb on + strandat 3228.240 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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3,225,646 - -0.0
3,225,910 + +1.4
3,226,131 - Shew_2726 0.40 +0.2
3,226,168 - Shew_2726 0.48 -0.1
3,226,168 - Shew_2726 0.48 -0.2
3,226,168 - Shew_2726 0.48 -0.2
3,226,168 - Shew_2726 0.48 -0.2
3,226,767 - Shew_2727 0.28 +0.3
3,227,013 - Shew_2727 0.63 +0.4
3,227,043 - Shew_2727 0.68 +0.5
3,227,168 - Shew_2727 0.85 +0.6
3,227,574 - Shew_2728 0.33 +0.2
3,227,657 + Shew_2728 0.43 +0.4
3,227,999 + Shew_2728 0.81 +0.1
3,228,084 - +0.3
3,228,107 + -0.1
3,228,240 + -0.0

Or see this region's nucleotide sequence