Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2120 and Shew_2121 are separated by 14 nucleotides Shew_2121 and Shew_2122 overlap by 4 nucleotides Shew_2122 and Shew_2123 are separated by 38 nucleotides
Shew_2120: Shew_2120 - hypothetical protein (RefSeq), at 2,456,566 to 2,457,546
_2120
Shew_2121: Shew_2121 - diguanylate cyclase (RefSeq), at 2,457,561 to 2,458,919
_2121
Shew_2122: Shew_2122 - putative sulfite oxidase subunit YedZ (RefSeq), at 2,458,916 to 2,459,533
_2122
Shew_2123: Shew_2123 - putative sulfite oxidase subunit YedY (RefSeq), at 2,459,572 to 2,460,582
_2123
Position (kb)
2457
2458
2459 Strain fitness (log2 ratio)
-1
0
1
2 at 2456.749 kb on - strand, within Shew_2120 at 2457.143 kb on + strand, within Shew_2120 at 2457.151 kb on - strand, within Shew_2120 at 2457.274 kb on - strand, within Shew_2120 at 2457.703 kb on + strand, within Shew_2121 at 2457.973 kb on + strand, within Shew_2121 at 2458.496 kb on + strand, within Shew_2121 at 2458.547 kb on + strand, within Shew_2121 at 2458.595 kb on + strand, within Shew_2121 at 2458.779 kb on - strand, within Shew_2121 at 2458.996 kb on + strand, within Shew_2122 at 2459.089 kb on + strand, within Shew_2122 at 2459.166 kb on - strand, within Shew_2122 at 2459.399 kb on - strand, within Shew_2122 at 2459.874 kb on - strand, within Shew_2123
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 2,456,749 - Shew_2120 0.19 +0.5 2,457,143 + Shew_2120 0.59 +0.6 2,457,151 - Shew_2120 0.60 -0.2 2,457,274 - Shew_2120 0.72 -0.2 2,457,703 + Shew_2121 0.10 +0.5 2,457,973 + Shew_2121 0.30 -0.1 2,458,496 + Shew_2121 0.69 +0.1 2,458,547 + Shew_2121 0.73 -0.2 2,458,595 + Shew_2121 0.76 +0.3 2,458,779 - Shew_2121 0.90 +2.5 2,458,996 + Shew_2122 0.13 -0.5 2,459,089 + Shew_2122 0.28 +0.2 2,459,166 - Shew_2122 0.40 +0.1 2,459,399 - Shew_2122 0.78 +0.0 2,459,874 - Shew_2123 0.30 +0.6
Or see this region's nucleotide sequence