Strain Fitness in Shewanella loihica PV-4 around Shew_2049

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2048 and Shew_2049 are separated by 308 nucleotidesShew_2049 and Shew_2050 are separated by 183 nucleotides Shew_2048: Shew_2048 - glucose-6-phosphate 1-dehydrogenase (RefSeq), at 2,363,612 to 2,365,084 _2048 Shew_2049: Shew_2049 - DNA-binding transcriptional regulator HexR (RefSeq), at 2,365,393 to 2,366,247 _2049 Shew_2050: Shew_2050 - pyruvate kinase (RefSeq), at 2,366,431 to 2,367,870 _2050 Position (kb) 2365 2366 2367Strain fitness (log2 ratio) -1 0 1 2 3at 2365.437 kb on - strandat 2365.540 kb on + strand, within Shew_2049at 2365.644 kb on + strand, within Shew_2049at 2365.930 kb on + strand, within Shew_2049at 2366.105 kb on - strand, within Shew_2049at 2366.150 kb on + strand, within Shew_2049

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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2,365,437 - +2.3
2,365,540 + Shew_2049 0.17 +2.4
2,365,644 + Shew_2049 0.29 +2.6
2,365,930 + Shew_2049 0.63 +2.8
2,366,105 - Shew_2049 0.83 +2.3
2,366,150 + Shew_2049 0.89 +2.6

Or see this region's nucleotide sequence